Wall clock time and date at job start Sun Mar 29 2020 22:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30431 * 125.98999 * 2 1 4 4 N 1.39928 * 108.91811 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.74487 * 179.97438 * 4 3 2 6 6 C 1.34230 * 108.51253 * 359.72722 * 4 3 2 7 7 C 1.38126 * 107.40713 * 0.42940 * 6 4 3 8 8 C 1.47286 * 126.42766 * 179.83501 * 7 6 4 9 9 O 1.21521 * 120.00041 * 179.68926 * 8 7 6 10 10 O 1.34754 * 119.99967 * 359.68620 * 8 7 6 11 11 C 1.45198 * 117.00242 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47372 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47076 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99858 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99533 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00648 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46746 * 60.00121 * 17 15 13 19 19 H 1.48494 * 109.47327 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46893 * 300.00426 * 17 15 13 21 21 H 1.09001 * 109.47121 * 269.97524 * 1 2 3 22 22 H 1.08996 * 109.47667 * 29.97640 * 1 2 3 23 23 H 1.09009 * 109.47176 * 149.97850 * 1 2 3 24 24 H 1.09003 * 109.47294 * 89.97555 * 5 4 3 25 25 H 1.08995 * 109.47428 * 209.97891 * 5 4 3 26 26 H 1.09004 * 109.46692 * 329.97534 * 5 4 3 27 27 H 1.07998 * 126.29531 * 180.26454 * 6 4 3 28 28 H 1.08998 * 109.47176 * 300.00214 * 11 10 8 29 29 H 1.08994 * 109.46872 * 60.00181 * 11 10 8 30 30 H 1.08998 * 109.47020 * 300.00157 * 12 11 10 31 31 H 1.09006 * 109.46668 * 60.00008 * 12 11 10 32 32 H 0.96996 * 120.00279 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6111 0.6446 -0.0006 5 6 4.7782 1.5300 -0.0013 6 6 3.6448 -0.6973 0.0051 7 6 2.3377 -1.1436 -0.0006 8 6 1.8928 -2.5476 -0.0008 9 8 0.7061 -2.8090 -0.0004 10 8 2.8019 -3.5424 -0.0014 11 6 2.2916 -4.9018 -0.0010 12 6 3.4628 -5.8862 -0.0012 13 6 2.9331 -7.2971 -0.0002 14 1 1.8677 -7.4738 0.0002 15 6 3.8087 -8.3621 -0.0007 16 7 5.1061 -8.1468 -0.0016 17 14 3.1521 -10.1110 -0.0001 18 1 2.3220 -10.3284 -1.2120 19 1 4.2888 -11.0665 -0.0002 20 1 2.3236 -10.3282 1.2129 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5134 23 1 -0.3634 -0.8899 -0.5142 24 1 5.0680 1.7501 1.0262 25 1 5.6055 1.0403 -0.5151 26 1 4.5296 2.4583 -0.5156 27 1 4.5311 -1.3145 0.0102 28 1 1.6835 -5.0613 0.8894 29 1 1.6822 -5.0613 -0.8905 30 1 4.0712 -5.7268 -0.8914 31 1 4.0718 -5.7265 0.8886 32 1 5.7221 -8.8961 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172186715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:59 Heat of formation + Delta-G solvation = -45.463165 kcal Electronic energy + Delta-G solvation = -16143.523814 eV Core-core repulsion = 13297.809509 eV Total energy + Delta-G solvation = -2845.714305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.51517 -40.87090 -37.53830 -35.41174 -34.99476 -32.56761 -31.54867 -30.36842 -27.50100 -26.60943 -24.09483 -22.84853 -21.84827 -20.70704 -18.96815 -18.30139 -17.70586 -17.49076 -16.68933 -16.56553 -16.34289 -15.29572 -14.96951 -14.43378 -14.36515 -14.34128 -14.10484 -13.42438 -13.12819 -13.10765 -13.00322 -12.92182 -12.55854 -12.53736 -12.06800 -11.80756 -11.46845 -11.40800 -11.23414 -10.57962 -10.44088 -9.83549 -8.24643 -6.37285 0.30980 0.92199 1.32344 1.43373 1.46496 1.54355 1.91951 2.13203 2.43248 3.09897 3.28590 3.69267 4.01091 4.13139 4.28437 4.35241 4.36962 4.43148 4.46854 4.70906 4.73211 4.74955 4.90277 4.93963 5.28397 5.41596 5.51109 5.61904 5.78183 5.80810 6.10118 6.43615 6.75227 6.87845 7.32239 8.87673 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.004489 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.403361 B = 6236.186211 C = 6871.537799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.127 3.873 3 N -0.320 5.320 4 N -0.355 5.355 5 C 0.085 3.915 6 C 0.147 3.853 7 C -0.314 4.314 8 C 0.535 3.465 9 O -0.546 6.546 10 O -0.362 6.362 11 C 0.093 3.907 12 C 0.033 3.967 13 C -0.551 4.551 14 H 0.064 0.936 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.221 0.779 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 18.625 -0.043 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.040 4.040 3 N -0.142 5.142 4 N -0.132 5.132 5 C -0.054 4.054 6 C -0.007 4.007 7 C -0.326 4.326 8 C 0.382 3.618 9 O -0.438 6.438 10 O -0.278 6.278 11 C 0.020 3.980 12 C -0.005 4.005 13 C -0.589 4.589 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 H 0.107 0.893 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.121 0.879 27 H 0.237 0.763 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.514 19.847 -0.048 19.854 hybrid contribution -0.140 -1.956 0.033 1.962 sum -0.654 17.891 -0.015 17.903 Atomic orbital electron populations 1.20382 0.84701 1.04229 1.04194 1.22752 0.98205 0.88232 0.94852 1.77121 0.87214 1.22290 1.27619 1.48774 1.06533 1.05228 1.52640 1.22503 0.82626 0.94531 1.05717 1.23712 0.99298 0.85368 0.92361 1.19483 0.94457 0.90154 1.28555 1.20445 0.83758 0.85797 0.71818 1.90733 1.18758 1.85291 1.48983 1.86527 1.40286 1.17163 1.83832 1.23140 0.98066 0.75926 1.00894 1.18968 0.92811 0.91902 0.96779 1.21361 0.93749 0.91304 1.52506 0.91791 1.25919 0.94961 1.04107 0.94077 1.70077 1.02761 1.33251 1.50421 0.85407 0.77964 0.77856 0.79271 1.19131 1.20447 1.19143 0.89323 0.88954 0.90217 0.88430 0.85983 0.87938 0.76272 0.92369 0.92356 0.97343 0.97350 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 9.92 71.24 0.71 -1.17 16 2 C 0.13 3.62 7.27 43.53 0.32 3.94 16 3 N -0.32 -8.39 12.50 -46.65 -0.58 -8.97 16 4 N -0.36 -7.28 3.98 -367.73 -1.46 -8.74 16 5 C 0.08 0.76 11.44 127.77 1.46 2.22 16 6 C 0.15 3.42 11.33 84.30 0.96 4.38 16 7 C -0.31 -9.73 6.13 -20.16 -0.12 -9.85 16 8 C 0.53 20.42 7.95 70.20 0.56 20.98 16 9 O -0.55 -22.86 14.71 19.77 0.29 -22.57 16 10 O -0.36 -14.92 10.05 -56.65 -0.57 -15.49 16 11 C 0.09 4.27 5.41 71.98 0.39 4.66 16 12 C 0.03 1.75 5.35 29.85 0.16 1.91 16 13 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 14 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 15 C 0.01 0.48 5.46 84.65 0.46 0.94 16 16 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 17 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.08 2.22 6.56 -2.38 -0.02 2.20 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 26 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 28 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -72.04 288.68 6.22 -65.82 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.11 Total: 2.23 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.12 Total: -3.09 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.76 Total: -72.42 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.28 Total: -38.06 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.04 6.22 -65.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172186715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.352 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds