Wall clock time and date at job start Sun Mar 29 2020 22:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 H 1.09000 * 109.47599 * 305.00721 * 3 2 1 5 5 C 1.50698 * 109.47247 * 185.00070 * 3 2 1 6 6 H 1.07991 * 120.00444 * 240.00482 * 5 3 2 7 7 C 1.37884 * 119.99448 * 60.00509 * 5 3 2 8 8 N 1.31509 * 120.00401 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99662 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47049 * 90.00183 * 9 7 5 11 11 H 1.48494 * 109.47081 * 210.00253 * 9 7 5 12 12 H 1.48502 * 109.46820 * 330.00045 * 9 7 5 13 13 N 1.46504 * 109.46853 * 65.00498 * 3 2 1 14 14 C 1.34775 * 120.00112 * 275.00036 * 13 3 2 15 15 O 1.21613 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47421 * 120.00269 * 179.97438 * 14 13 3 17 17 N 1.36070 * 126.44633 * 359.97438 * 16 14 13 18 18 C 1.29937 * 108.47744 * 180.02562 * 17 16 14 19 19 O 1.34052 * 109.23877 * 359.73731 * 18 17 16 20 20 C 1.34250 * 108.22872 * 0.43083 * 19 18 17 21 21 C 1.50706 * 126.52439 * 179.84335 * 20 19 18 22 22 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46706 * 299.99327 * 1 2 3 24 24 H 1.09000 * 109.47660 * 59.99323 * 1 2 3 25 25 H 1.08999 * 109.46601 * 240.00710 * 2 1 3 26 26 H 1.08992 * 109.47373 * 120.00812 * 2 1 3 27 27 H 0.96994 * 120.00270 * 179.97438 * 8 7 5 28 28 H 0.97004 * 120.00176 * 94.99307 * 13 3 2 29 29 H 1.07994 * 125.37623 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46953 * 269.68635 * 21 20 19 31 31 H 1.09000 * 109.47318 * 29.68233 * 21 20 19 32 32 H 1.09000 * 109.47161 * 149.68863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3377 -2.1735 9 14 6.0049 0.8814 -1.3821 10 1 6.5548 -0.3501 -0.7606 11 1 6.3828 0.9227 -2.8175 12 1 6.5568 2.0739 -0.6904 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3417 2.6318 0.4322 16 6 0.0451 3.3228 2.6271 17 7 0.8052 3.4342 3.7502 18 6 0.1212 4.0773 4.6484 19 8 -1.0774 4.4010 4.1428 20 6 -1.1433 3.9332 2.8862 21 6 -2.3091 4.0647 1.9401 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.8290 -0.0600 -2.9505 28 1 2.2720 2.1230 1.9979 29 1 0.4657 4.3174 5.6433 30 1 -2.9714 3.2071 2.0583 31 1 -2.8568 4.9802 2.1635 32 1 -1.9422 4.1018 0.9144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183937507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:22 Heat of formation + Delta-G solvation = -24.814167 kcal Electronic energy + Delta-G solvation = -17044.360105 eV Core-core repulsion = 14199.541208 eV Total energy + Delta-G solvation = -2844.818897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.27417 -38.83305 -35.12154 -34.65754 -32.35965 -32.13578 -30.85097 -27.61261 -26.61532 -23.83546 -22.83112 -21.70215 -20.24245 -19.32848 -18.03988 -16.76096 -16.40069 -15.58470 -15.23235 -14.72447 -14.39878 -14.12186 -13.57544 -13.07800 -12.91467 -12.64530 -12.31124 -12.10109 -11.53465 -11.22785 -11.10825 -10.96322 -10.78945 -10.62729 -10.29696 -10.15378 -9.61755 -9.21700 -9.01456 -8.75186 -8.47791 -7.78224 -6.09812 -4.18543 1.31647 2.31204 2.68400 3.27191 3.33772 3.36790 3.94080 3.95296 4.28571 4.43848 4.81404 5.21438 5.24149 5.37801 5.55320 5.59731 5.94869 6.13872 6.30273 6.41305 6.48343 6.67926 7.07493 7.20004 7.37762 7.45231 7.55199 7.67537 7.79612 7.93457 8.19741 8.70771 8.79364 9.12162 9.48395 10.95716 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.006534 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.380933 B = 4284.378314 C = 4778.166258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.686 5.686 14 C 0.584 3.416 15 O -0.545 6.545 16 C -0.064 4.064 17 N -0.460 5.460 18 C 0.161 3.839 19 O -0.207 6.207 20 C 0.026 3.974 21 C -0.072 4.072 22 H 0.023 0.977 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.032 0.968 27 H 0.264 0.736 28 H 0.397 0.603 29 H 0.251 0.749 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 5.845 10.803 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.333 5.333 14 C 0.368 3.632 15 O -0.425 6.425 16 C -0.185 4.185 17 N -0.189 5.189 18 C -0.067 4.067 19 O -0.093 6.093 20 C -0.030 4.030 21 C -0.129 4.129 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.230 0.770 29 H 0.267 0.733 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.621 5.480 9.998 13.714 hybrid contribution 0.817 0.225 0.513 0.991 sum -6.804 5.705 10.512 13.760 Atomic orbital electron populations 1.21843 0.98357 0.98085 1.01179 1.21943 0.92648 0.99702 1.02394 1.18865 0.94381 0.89247 0.80719 0.93081 1.21248 0.90673 1.38932 1.06308 0.91984 1.24875 0.98634 0.94792 0.95329 1.69888 1.35115 1.37735 1.09348 0.86446 0.84867 0.78491 0.77313 1.20525 1.21080 1.19844 1.46371 1.14042 1.54103 1.18753 1.16724 0.83354 0.78985 0.84155 1.90739 1.51923 1.60997 1.38806 1.22027 0.92571 1.07682 0.96171 1.70773 1.31860 1.16090 1.00163 1.27937 0.79626 0.98264 1.00873 1.84322 1.37407 1.61862 1.25751 1.23736 0.98796 0.97065 0.83392 1.20551 0.92213 1.02993 0.97122 0.95812 0.94381 0.93032 0.88146 0.94962 0.92577 0.76964 0.73297 0.89348 0.90690 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 6.94 2.24 -69.08 -0.15 6.78 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.24 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.69 -15.42 5.02 -56.01 -0.28 -15.70 16 14 C 0.58 12.40 6.38 -12.52 -0.08 12.32 16 15 O -0.54 -12.37 11.94 5.27 0.06 -12.31 16 16 C -0.06 -1.15 6.99 -83.02 -0.58 -1.73 16 17 N -0.46 -7.39 11.06 -11.48 -0.13 -7.52 16 18 C 0.16 1.89 13.19 51.96 0.69 2.57 16 19 O -0.21 -2.65 10.73 6.52 0.07 -2.58 16 20 C 0.03 0.39 7.44 -35.08 -0.26 0.13 16 21 C -0.07 -0.88 9.88 36.01 0.36 -0.53 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.84 5.64 -51.92 -0.29 0.55 16 24 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 25 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.40 8.43 8.27 -40.82 -0.34 8.10 16 29 H 0.25 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 1.62 6.48 -51.93 -0.34 1.28 16 LS Contribution 273.43 15.07 4.12 4.12 Total: -1.00 -30.99 273.43 -4.54 -35.53 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.73 Total: 6.38 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.26 Total: 0.43 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.22 Total: -47.46 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.13 Total: -14.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.99 -4.54 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.712 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds