Wall clock time and date at job start Sun Mar 29 2020 22:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 H 1.09000 * 109.47599 * 305.00721 * 3 2 1 5 5 C 1.50698 * 109.47247 * 185.00070 * 3 2 1 6 6 H 1.07991 * 120.00444 * 240.00482 * 5 3 2 7 7 C 1.37884 * 119.99448 * 60.00509 * 5 3 2 8 8 N 1.31509 * 120.00401 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99662 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47049 * 90.00183 * 9 7 5 11 11 H 1.48494 * 109.47081 * 210.00253 * 9 7 5 12 12 H 1.48502 * 109.46820 * 330.00045 * 9 7 5 13 13 N 1.46504 * 109.46853 * 65.00498 * 3 2 1 14 14 C 1.34775 * 120.00112 * 275.00036 * 13 3 2 15 15 O 1.21613 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.47421 * 120.00269 * 179.97438 * 14 13 3 17 17 N 1.36070 * 126.44633 * 359.97438 * 16 14 13 18 18 C 1.29937 * 108.47744 * 180.02562 * 17 16 14 19 19 O 1.34052 * 109.23877 * 359.73731 * 18 17 16 20 20 C 1.34250 * 108.22872 * 0.43083 * 19 18 17 21 21 C 1.50706 * 126.52439 * 179.84335 * 20 19 18 22 22 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46706 * 299.99327 * 1 2 3 24 24 H 1.09000 * 109.47660 * 59.99323 * 1 2 3 25 25 H 1.08999 * 109.46601 * 240.00710 * 2 1 3 26 26 H 1.08992 * 109.47373 * 120.00812 * 2 1 3 27 27 H 0.96994 * 120.00270 * 179.97438 * 8 7 5 28 28 H 0.97004 * 120.00176 * 94.99307 * 13 3 2 29 29 H 1.07994 * 125.37623 * 180.02562 * 18 17 16 30 30 H 1.09001 * 109.46953 * 269.68635 * 21 20 19 31 31 H 1.09000 * 109.47318 * 29.68233 * 21 20 19 32 32 H 1.09000 * 109.47161 * 149.68863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3377 -2.1735 9 14 6.0049 0.8814 -1.3821 10 1 6.5548 -0.3501 -0.7606 11 1 6.3828 0.9227 -2.8175 12 1 6.5568 2.0739 -0.6904 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3417 2.6318 0.4322 16 6 0.0451 3.3228 2.6271 17 7 0.8052 3.4342 3.7502 18 6 0.1212 4.0773 4.6484 19 8 -1.0774 4.4010 4.1428 20 6 -1.1433 3.9332 2.8862 21 6 -2.3091 4.0647 1.9401 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.8290 -0.0600 -2.9505 28 1 2.2720 2.1230 1.9979 29 1 0.4657 4.3174 5.6433 30 1 -2.9714 3.2071 2.0583 31 1 -2.8568 4.9802 2.1635 32 1 -1.9422 4.1018 0.9144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:22 Heat of formation + Delta-G solvation = -48.872436 kcal Electronic energy + Delta-G solvation = -17045.403350 eV Core-core repulsion = 14199.541208 eV Total energy + Delta-G solvation = -2845.862142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.37255 -40.54301 -37.01065 -35.83461 -34.27848 -33.30202 -32.73462 -29.28834 -28.07667 -25.43747 -24.48034 -22.95342 -21.77675 -21.16946 -19.55906 -18.09798 -17.86295 -17.27722 -16.88184 -16.18597 -16.12542 -15.55868 -15.01540 -14.62359 -14.42454 -13.93979 -13.86456 -13.49535 -13.30755 -13.18391 -12.91135 -12.67965 -12.34884 -12.18641 -12.07618 -11.75328 -11.60169 -11.07748 -10.89419 -10.54572 -9.96952 -9.59901 -8.17640 -6.34782 0.13629 1.16821 1.43883 1.44425 1.55164 1.64643 2.33571 2.41189 2.56986 3.11431 3.25153 3.70654 3.96606 4.28077 4.47161 4.49530 4.56498 4.61559 4.74050 4.90662 5.04671 5.16030 5.22464 5.27202 5.42362 5.53673 5.59345 5.77328 5.88280 6.14443 6.50023 6.71122 6.95344 7.29165 7.46685 8.87913 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.006534 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.380933 B = 4284.378314 C = 4778.166258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.268 1.268 13 N -0.691 5.691 14 C 0.582 3.418 15 O -0.568 6.568 16 C -0.105 4.105 17 N -0.500 5.500 18 C 0.194 3.806 19 O -0.197 6.197 20 C 0.042 3.958 21 C -0.072 4.072 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.402 0.598 29 H 0.308 0.692 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 6.581 12.976 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.338 5.338 14 C 0.368 3.632 15 O -0.449 6.449 16 C -0.224 4.224 17 N -0.229 5.229 18 C -0.034 4.034 19 O -0.084 6.084 20 C -0.015 4.015 21 C -0.128 4.128 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.236 0.764 29 H 0.323 0.677 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.717 6.218 12.187 15.708 hybrid contribution 0.774 0.070 -0.074 0.781 sum -6.943 6.289 12.113 15.313 Atomic orbital electron populations 1.21671 0.96631 0.99337 1.00353 1.21793 0.94125 0.98880 1.01239 1.18472 0.93771 0.89347 0.80846 0.97564 1.21547 0.91467 1.39313 1.06784 0.91727 1.25732 1.03379 0.94196 0.94833 1.70022 1.37052 1.38155 1.09788 0.85373 0.79027 0.78801 0.77313 1.19579 1.20771 1.19280 1.46167 1.15017 1.54879 1.17767 1.17151 0.82421 0.78297 0.85345 1.90714 1.52322 1.61714 1.40194 1.21542 0.94596 1.10418 0.95807 1.70709 1.33052 1.18581 1.00523 1.29204 0.78092 0.94642 1.01493 1.84384 1.37919 1.61472 1.24635 1.24031 0.98207 0.95136 0.84172 1.20622 0.91703 1.05302 0.95222 0.93390 0.94212 0.94757 0.90529 0.94604 0.92409 0.76365 0.67711 0.88019 0.87292 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.19 5.45 30.60 0.17 -6.03 16 3 C 0.28 14.92 2.24 44.24 0.10 15.02 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -30.64 8.73 25.60 0.22 -30.41 16 6 H 0.06 3.45 7.74 -2.92 -0.02 3.43 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -52.61 11.29 21.45 0.24 -52.37 16 9 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.69 -32.02 5.02 -449.36 -2.25 -34.28 16 14 C 0.58 25.32 6.38 86.66 0.55 25.88 16 15 O -0.57 -26.75 11.94 -4.07 -0.05 -26.80 16 16 C -0.11 -3.71 6.99 40.41 0.28 -3.43 16 17 N -0.50 -15.24 11.06 -305.15 -3.37 -18.61 16 18 C 0.19 3.81 13.19 130.52 1.72 5.53 16 19 O -0.20 -4.37 10.73 0.43 0.00 -4.37 16 20 C 0.04 1.17 7.44 25.19 0.19 1.36 16 21 C -0.07 -1.65 9.88 71.24 0.70 -0.94 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.04 1.78 5.64 -2.38 -0.01 1.76 16 24 H 0.03 1.65 7.84 -2.39 -0.02 1.63 16 25 H 0.08 4.29 5.95 -2.39 -0.01 4.27 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.40 17.51 8.27 -92.71 -0.77 16.74 16 29 H 0.31 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.58 6.48 -2.39 -0.02 2.56 16 Total: -1.00 -69.52 273.43 1.97 -67.54 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.38 Total: 20.31 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.00 Total: 3.47 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -5.39 Total: -105.25 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.52 1.97 -67.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.671 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds