Wall clock time and date at job start Sun Mar 29 2020 22:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34819 * 116.99985 * 90.00123 * 13 3 2 15 15 O 1.21557 * 119.99947 * 0.02562 * 14 13 3 16 16 C 1.47007 * 120.00391 * 179.97438 * 14 13 3 17 17 C 1.38486 * 126.89543 * 179.68396 * 16 14 13 18 18 C 1.39643 * 105.35662 * 179.89877 * 17 16 14 19 19 N 1.30880 * 107.87595 * 0.37954 * 18 17 16 20 20 N 1.28443 * 110.94715 * 359.75847 * 19 18 17 21 21 C 1.46494 * 125.19622 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 1.07997 * 127.31804 * 0.02562 * 17 16 14 29 29 H 1.07994 * 126.06150 * 180.13253 * 18 17 16 30 30 H 1.09000 * 109.47645 * 269.99619 * 21 20 19 31 31 H 1.09004 * 109.47436 * 30.00014 * 21 20 19 32 32 H 1.09010 * 109.47193 * 149.99579 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 8 1.6559 2.0916 -1.2407 14 6 0.4676 2.7281 -1.2562 15 8 -0.2282 2.7406 -0.2595 16 6 0.0137 3.4081 -2.4779 17 6 -1.1756 4.0955 -2.6539 18 6 -1.1439 4.5581 -3.9711 19 7 -0.0214 4.1564 -4.5111 20 7 0.6779 3.4834 -3.6698 21 6 1.9877 2.8881 -3.9456 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 -1.9597 4.2441 -1.9263 29 1 -1.9115 5.1404 -4.4590 30 1 1.8538 1.8751 -4.3249 31 1 2.5103 3.4887 -4.6902 32 1 2.5737 2.8577 -3.0270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188015382.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:46 Heat of formation + Delta-G solvation = -32.411730 kcal Electronic energy + Delta-G solvation = -17240.067656 eV Core-core repulsion = 14394.919304 eV Total energy + Delta-G solvation = -2845.148352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.54032 -41.16031 -37.71977 -35.59542 -34.31125 -33.39338 -32.01357 -29.35934 -28.05670 -25.79413 -24.54122 -22.55767 -22.07491 -21.11102 -19.28006 -18.63761 -17.81487 -17.56470 -16.68490 -16.60124 -16.25646 -15.13349 -14.94764 -14.69414 -14.50568 -14.01907 -13.77535 -13.54546 -13.33251 -13.27245 -13.05063 -12.82493 -12.57732 -12.15788 -12.06535 -11.77297 -11.57968 -11.39323 -10.86474 -10.54872 -10.31943 -10.07074 -8.27821 -6.44810 0.01221 1.41231 1.45306 1.46303 1.53823 1.57111 1.85352 1.95707 2.39895 3.02566 3.50950 3.72669 4.20996 4.34442 4.34826 4.35938 4.37452 4.50859 4.55941 4.76434 4.80465 4.88604 5.06103 5.18130 5.29269 5.44443 5.49202 5.64037 5.69481 5.89428 6.05489 6.56618 6.79862 7.00299 7.25828 8.78857 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.007150 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.106117 B = 3915.409080 C = 4428.975694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.262 1.262 13 O -0.352 6.352 14 C 0.526 3.474 15 O -0.525 6.525 16 C -0.050 4.050 17 C -0.157 4.157 18 C 0.001 3.999 19 N -0.283 5.283 20 N -0.266 5.266 21 C 0.077 3.923 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.271 0.729 28 H 0.178 0.822 29 H 0.231 0.769 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 4.286 -11.037 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.187 1.187 13 O -0.268 6.268 14 C 0.370 3.630 15 O -0.415 6.415 16 C -0.175 4.175 17 C -0.186 4.186 18 C -0.173 4.173 19 N -0.118 5.118 20 N -0.056 5.056 21 C -0.062 4.062 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.195 0.805 29 H 0.248 0.752 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.742 4.098 -11.519 12.786 hybrid contribution 0.285 -0.218 1.447 1.490 sum -3.457 3.881 -10.073 11.335 Atomic orbital electron populations 1.21728 0.96508 1.00658 0.99989 1.21883 0.94245 0.98034 1.02588 1.20472 0.94737 0.89215 0.78180 0.97343 1.21272 0.90119 1.40118 1.07072 0.91095 1.25770 1.04035 0.93883 0.94392 1.70001 1.37523 1.37788 1.09861 0.85289 0.77859 0.78708 0.77910 1.19515 1.20506 1.18695 1.86540 1.34372 1.62938 1.42989 1.20084 0.80366 0.76089 0.86496 1.90820 1.56037 1.59560 1.35046 1.20951 0.98230 1.10626 0.87736 1.22525 0.96475 1.00202 0.99349 1.24237 0.96585 1.03912 0.92565 1.73158 1.06942 1.10899 1.20800 1.46057 1.16887 1.36592 1.06084 1.22578 0.78193 1.00019 1.05430 0.91942 0.94859 0.94390 0.89345 0.93291 0.92009 0.80509 0.75225 0.88436 0.86132 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.56 71.98 0.62 -5.09 16 2 C -0.13 -6.33 5.49 30.60 0.17 -6.16 16 3 C 0.23 11.91 2.25 29.85 0.07 11.97 16 4 H 0.01 0.52 7.16 -2.39 -0.02 0.51 16 5 C -0.55 -29.67 8.90 25.60 0.23 -29.45 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -51.03 11.29 21.45 0.24 -50.78 16 9 Si 0.98 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 13 O -0.35 -16.13 7.27 -57.31 -0.42 -16.54 16 14 C 0.53 22.60 6.38 70.12 0.45 23.05 16 15 O -0.53 -25.06 14.11 19.65 0.28 -24.78 16 16 C -0.05 -1.76 6.96 40.75 0.28 -1.47 16 17 C -0.16 -4.46 10.85 22.67 0.25 -4.21 16 18 C 0.00 0.03 12.03 85.17 1.02 1.06 16 19 N -0.28 -7.88 11.90 -57.15 -0.68 -8.56 16 20 N -0.27 -8.15 3.75 -356.07 -1.34 -9.49 16 21 C 0.08 1.97 10.81 127.77 1.38 3.35 16 22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.03 1.40 6.06 -2.39 -0.01 1.38 16 24 H 0.04 1.74 7.79 -2.38 -0.02 1.73 16 25 H 0.09 4.74 5.95 -2.39 -0.01 4.72 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.23 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.10 2.91 6.15 -2.38 -0.01 2.90 16 Total: -1.00 -64.64 274.61 6.15 -58.49 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.12 Total: 13.70 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.91 Total: -5.48 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.77 Total: -68.84 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.14 Total: -41.33 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -64.64 6.15 -58.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188015382.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.077 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds