Wall clock time and date at job start Sun Mar 29 2020 22:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 H 1.09007 * 109.47077 * 305.58036 * 3 2 1 5 5 C 1.50700 * 109.47327 * 185.58010 * 3 2 1 6 6 H 1.08006 * 119.99587 * 244.94230 * 5 3 2 7 7 C 1.37877 * 120.00191 * 64.66796 * 5 3 2 8 8 N 1.31517 * 119.99801 * 7.34337 * 7 5 3 9 9 Si 1.86799 * 120.00060 * 187.34338 * 7 5 3 10 10 H 1.48501 * 109.46856 * 94.72503 * 9 7 5 11 11 H 1.48498 * 109.46981 * 214.72543 * 9 7 5 12 12 H 1.48498 * 109.47251 * 334.72919 * 9 7 5 13 13 O 1.45200 * 109.47214 * 65.57941 * 3 2 1 14 14 C 1.34825 * 116.99890 * 270.00142 * 13 3 2 15 15 O 1.21556 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.47003 * 120.00267 * 179.97438 * 14 13 3 17 17 C 1.38481 * 126.89355 * 179.68162 * 16 14 13 18 18 C 1.39647 * 105.35299 * 179.89568 * 17 16 14 19 19 N 1.30873 * 107.87817 * 0.38002 * 18 17 16 20 20 N 1.28440 * 110.94554 * 359.75819 * 19 18 17 21 21 C 1.46500 * 125.19391 * 180.02562 * 20 19 18 22 22 H 1.09003 * 109.46840 * 299.99836 * 1 2 3 23 23 H 1.08997 * 109.47267 * 60.00078 * 1 2 3 24 24 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47102 * 239.99482 * 2 1 3 26 26 H 1.09004 * 109.47382 * 119.99584 * 2 1 3 27 27 H 0.97001 * 120.00057 * 180.02562 * 8 7 5 28 28 H 1.08000 * 127.32391 * 359.97438 * 17 16 14 29 29 H 1.08003 * 126.06006 * 180.13923 * 18 17 16 30 30 H 1.08997 * 109.47195 * 269.95786 * 21 20 19 31 31 H 1.08999 * 109.47701 * 29.96278 * 21 20 19 32 32 H 1.09009 * 109.47105 * 149.95855 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9844 -0.8359 5 6 3.5406 1.4447 -0.1382 6 1 4.1566 1.8140 0.6685 7 6 4.1275 0.9701 -1.2920 8 7 3.3805 0.6508 -2.3263 9 14 5.9834 0.7806 -1.3862 10 1 6.3569 -0.6138 -1.0378 11 1 6.4428 1.0864 -2.7649 12 1 6.6259 1.7185 -0.4309 13 8 1.6677 2.0875 1.2465 14 6 0.4796 2.7240 1.2753 15 8 -0.2256 2.7397 0.2853 16 6 0.0368 3.3990 2.5038 17 6 -1.1452 4.0960 2.6896 18 6 -1.1062 4.5445 4.0115 19 7 0.0208 4.1401 4.5398 20 7 0.7119 3.4697 3.6898 21 6 2.0234 2.8717 3.9519 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7933 0.3166 -3.1380 28 1 -1.9309 4.2574 1.9663 29 1 -1.8689 5.1256 4.5085 30 1 2.8058 3.5892 3.7048 31 1 2.0963 2.6031 5.0057 32 1 2.1439 1.9776 3.3400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188015405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:49 Heat of formation + Delta-G solvation = -16.089242 kcal Electronic energy + Delta-G solvation = -17230.976751 eV Core-core repulsion = 14386.536195 eV Total energy + Delta-G solvation = -2844.440556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.32895 -39.42475 -35.91713 -33.71386 -33.06707 -31.58485 -30.68322 -27.42812 -26.92829 -24.05713 -22.81289 -21.38602 -20.35876 -19.54472 -17.78610 -16.69845 -16.20138 -16.07279 -15.14433 -15.05207 -14.56991 -13.72410 -13.58085 -13.13428 -12.86252 -12.71260 -12.40876 -12.09793 -11.64203 -11.42928 -11.31815 -11.05527 -10.76776 -10.71329 -10.34210 -9.99088 -9.82665 -9.50482 -9.06963 -8.94945 -8.89227 -8.54782 -6.27926 -4.33558 1.41038 2.64064 2.72165 3.18976 3.24485 3.27693 3.45847 3.47277 4.26234 4.65071 5.05570 5.11101 5.26964 5.39944 5.57795 5.66865 5.86237 6.01378 6.12538 6.19464 6.32866 6.58634 6.74312 6.79945 6.88535 7.03859 7.07736 7.49270 7.57557 7.75773 8.00970 8.12098 8.48087 8.77119 9.31226 10.80815 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.007141 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.867044 B = 3919.940813 C = 4421.771083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.221 3.779 4 H 0.055 0.945 5 C -0.526 4.526 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.909 3.091 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.527 3.473 15 O -0.496 6.496 16 C -0.014 4.014 17 C -0.166 4.166 18 C -0.012 4.012 19 N -0.281 5.281 20 N -0.262 5.262 21 C 0.082 3.918 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.267 0.733 28 H 0.164 0.836 29 H 0.186 0.814 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 3.086 9.750 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.073 0.927 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.368 3.632 15 O -0.383 6.383 16 C -0.140 4.140 17 C -0.194 4.194 18 C -0.187 4.187 19 N -0.115 5.115 20 N -0.052 5.052 21 C -0.058 4.058 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.181 0.819 29 H 0.203 0.797 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.860 2.925 10.194 11.286 hybrid contribution 0.422 -0.190 -0.999 1.101 sum -3.438 2.736 9.195 10.191 Atomic orbital electron populations 1.21876 0.98025 0.99296 1.01064 1.21941 0.93009 0.99231 1.02523 1.20775 0.95434 0.88657 0.78270 0.92680 1.20967 0.89331 1.43777 1.02327 0.91288 1.24893 0.99148 0.94985 0.94696 1.69971 1.35704 1.43002 1.03383 0.86312 0.83913 0.78640 0.77602 1.20331 1.20953 1.19587 1.86536 1.33439 1.62743 1.44443 1.19584 0.81334 0.76715 0.85527 1.90846 1.55026 1.58175 1.34243 1.21131 0.96325 1.08506 0.88029 1.22153 0.97561 1.01712 0.97986 1.23520 0.96450 1.05071 0.93659 1.73124 1.06442 1.11191 1.20761 1.45853 1.16176 1.36402 1.06788 1.22439 0.78513 1.00585 1.04257 0.94776 0.92530 0.94597 0.88768 0.93690 0.92284 0.81885 0.79653 0.89405 0.88975 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.57 37.15 0.32 -2.75 16 2 C -0.13 -3.03 5.53 -26.74 -0.15 -3.17 16 3 C 0.22 5.58 2.12 -27.88 -0.06 5.52 16 4 H 0.06 1.57 7.14 -51.93 -0.37 1.20 16 5 C -0.53 -13.98 8.83 -34.44 -0.30 -14.28 16 6 H 0.07 1.78 7.82 -52.48 -0.41 1.37 16 7 C 0.07 1.75 5.19 -17.82 -0.09 1.66 16 8 N -0.88 -24.41 12.00 55.43 0.67 -23.74 16 9 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 O -0.36 -7.89 7.28 -40.83 -0.30 -8.19 16 14 C 0.53 11.08 6.41 34.28 0.22 11.30 16 15 O -0.50 -11.46 14.11 -19.31 -0.27 -11.73 16 16 C -0.01 -0.25 6.96 -82.08 -0.57 -0.82 16 17 C -0.17 -2.52 10.85 -38.97 -0.42 -2.95 16 18 C -0.01 -0.16 12.03 -17.43 -0.21 -0.37 16 19 N -0.28 -4.29 11.90 30.58 0.36 -3.92 16 20 N -0.26 -4.21 3.75 -63.90 -0.24 -4.45 16 21 C 0.08 1.09 10.81 59.85 0.65 1.73 16 22 H 0.03 0.70 6.05 -51.93 -0.31 0.39 16 23 H 0.06 1.26 7.82 -51.93 -0.41 0.85 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 2.40 6.64 -51.93 -0.34 2.05 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.19 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.12 1.69 6.15 -51.92 -0.32 1.37 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -29.84 275.81 -5.10 -34.95 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.84 Total: 1.78 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.62 Total: -4.13 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.79 Total: -32.11 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.57 Total: -19.92 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.84 -5.10 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188015405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds