Wall clock time and date at job start Sun Mar 29 2020 22:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 H 1.09007 * 109.47077 * 305.58036 * 3 2 1 5 5 C 1.50700 * 109.47327 * 185.58010 * 3 2 1 6 6 H 1.08006 * 119.99587 * 244.94230 * 5 3 2 7 7 C 1.37877 * 120.00191 * 64.66796 * 5 3 2 8 8 N 1.31517 * 119.99801 * 7.34337 * 7 5 3 9 9 Si 1.86799 * 120.00060 * 187.34338 * 7 5 3 10 10 H 1.48501 * 109.46856 * 94.72503 * 9 7 5 11 11 H 1.48498 * 109.46981 * 214.72543 * 9 7 5 12 12 H 1.48498 * 109.47251 * 334.72919 * 9 7 5 13 13 O 1.45200 * 109.47214 * 65.57941 * 3 2 1 14 14 C 1.34825 * 116.99890 * 270.00142 * 13 3 2 15 15 O 1.21556 * 119.99885 * 359.97438 * 14 13 3 16 16 C 1.47003 * 120.00267 * 179.97438 * 14 13 3 17 17 C 1.38481 * 126.89355 * 179.68162 * 16 14 13 18 18 C 1.39647 * 105.35299 * 179.89568 * 17 16 14 19 19 N 1.30873 * 107.87817 * 0.38002 * 18 17 16 20 20 N 1.28440 * 110.94554 * 359.75819 * 19 18 17 21 21 C 1.46500 * 125.19391 * 180.02562 * 20 19 18 22 22 H 1.09003 * 109.46840 * 299.99836 * 1 2 3 23 23 H 1.08997 * 109.47267 * 60.00078 * 1 2 3 24 24 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47102 * 239.99482 * 2 1 3 26 26 H 1.09004 * 109.47382 * 119.99584 * 2 1 3 27 27 H 0.97001 * 120.00057 * 180.02562 * 8 7 5 28 28 H 1.08000 * 127.32391 * 359.97438 * 17 16 14 29 29 H 1.08003 * 126.06006 * 180.13923 * 18 17 16 30 30 H 1.08997 * 109.47195 * 269.95786 * 21 20 19 31 31 H 1.08999 * 109.47701 * 29.96278 * 21 20 19 32 32 H 1.09009 * 109.47105 * 149.95855 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9844 -0.8359 5 6 3.5406 1.4447 -0.1382 6 1 4.1566 1.8140 0.6685 7 6 4.1275 0.9701 -1.2920 8 7 3.3805 0.6508 -2.3263 9 14 5.9834 0.7806 -1.3862 10 1 6.3569 -0.6138 -1.0378 11 1 6.4428 1.0864 -2.7649 12 1 6.6259 1.7185 -0.4309 13 8 1.6677 2.0875 1.2465 14 6 0.4796 2.7240 1.2753 15 8 -0.2256 2.7397 0.2853 16 6 0.0368 3.3990 2.5038 17 6 -1.1452 4.0960 2.6896 18 6 -1.1062 4.5445 4.0115 19 7 0.0208 4.1401 4.5398 20 7 0.7119 3.4697 3.6898 21 6 2.0234 2.8717 3.9519 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7933 0.3166 -3.1380 28 1 -1.9309 4.2574 1.9663 29 1 -1.8689 5.1256 4.5085 30 1 2.8058 3.5892 3.7048 31 1 2.0963 2.6031 5.0057 32 1 2.1439 1.9776 3.3400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188015405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:49 Heat of formation + Delta-G solvation = -33.924105 kcal Electronic energy + Delta-G solvation = -17231.750129 eV Core-core repulsion = 14386.536195 eV Total energy + Delta-G solvation = -2845.213934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.53966 -41.15692 -37.71453 -35.55595 -34.30844 -33.47452 -32.01581 -29.35196 -28.05677 -25.78934 -24.54379 -22.55584 -22.10697 -21.11937 -19.28596 -18.60132 -17.82595 -17.58934 -16.69105 -16.57856 -16.24758 -15.14227 -14.94975 -14.69704 -14.50621 -14.07903 -13.66651 -13.56638 -13.41924 -13.24182 -13.12950 -12.83370 -12.54352 -12.14649 -12.06559 -11.80321 -11.58096 -11.39279 -10.87502 -10.57387 -10.31944 -10.06940 -8.30320 -6.44466 0.01439 1.41258 1.43518 1.45967 1.55102 1.57223 1.85519 1.95854 2.39725 3.01887 3.51015 3.72466 4.20651 4.32461 4.34193 4.35235 4.36657 4.49797 4.54915 4.76381 4.80798 4.88655 5.04674 5.16088 5.26865 5.44429 5.49816 5.58871 5.69625 5.82504 6.03316 6.57370 6.80564 7.00476 7.25712 8.79016 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032938 B = 0.007141 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.867044 B = 3919.940813 C = 4421.771083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.225 3.775 4 H 0.012 0.988 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.263 1.263 13 O -0.352 6.352 14 C 0.525 3.475 15 O -0.525 6.525 16 C -0.050 4.050 17 C -0.157 4.157 18 C 0.001 3.999 19 N -0.283 5.283 20 N -0.266 5.266 21 C 0.077 3.923 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.270 0.730 28 H 0.177 0.823 29 H 0.231 0.769 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 3.446 11.594 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.030 0.970 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.801 3.199 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.187 1.187 13 O -0.268 6.268 14 C 0.370 3.630 15 O -0.414 6.414 16 C -0.175 4.175 17 C -0.186 4.186 18 C -0.173 4.173 19 N -0.118 5.118 20 N -0.056 5.056 21 C -0.062 4.062 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.195 0.805 29 H 0.248 0.752 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.789 3.287 12.061 13.063 hybrid contribution 0.309 -0.219 -1.511 1.557 sum -3.481 3.068 10.551 11.526 Atomic orbital electron populations 1.21733 0.96266 1.00834 1.00170 1.21791 0.94525 0.97871 1.01834 1.20480 0.94951 0.89240 0.78135 0.96999 1.21280 0.90109 1.44312 1.02794 0.91064 1.25784 1.03918 0.94266 0.94079 1.70094 1.37766 1.43517 1.03943 0.85253 0.77994 0.79058 0.77633 1.19276 1.20758 1.18729 1.86539 1.34511 1.63064 1.42719 1.20087 0.80395 0.76081 0.86481 1.90824 1.55567 1.59369 1.35675 1.20944 0.98151 1.10692 0.87730 1.22526 0.96683 1.00183 0.99179 1.24236 0.96404 1.03998 0.92661 1.73154 1.07055 1.10978 1.20604 1.46058 1.16775 1.36626 1.06162 1.22573 0.77844 0.99950 1.05797 0.94606 0.94424 0.91723 0.90997 0.92585 0.92072 0.80526 0.75231 0.88797 0.85985 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.04 16 2 C -0.12 -5.85 5.53 30.59 0.17 -5.68 16 3 C 0.22 11.76 2.12 29.85 0.06 11.82 16 4 H 0.01 0.73 7.14 -2.38 -0.02 0.71 16 5 C -0.55 -29.63 8.83 25.60 0.23 -29.41 16 6 H 0.07 3.72 7.82 -2.91 -0.02 3.70 16 7 C 0.02 1.06 5.19 84.65 0.44 1.50 16 8 N -0.92 -51.74 12.00 21.45 0.26 -51.48 16 9 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 O -0.35 -16.06 7.28 -57.37 -0.42 -16.47 16 14 C 0.53 22.57 6.41 70.12 0.45 23.02 16 15 O -0.53 -25.09 14.11 19.65 0.28 -24.81 16 16 C -0.05 -1.74 6.96 40.75 0.28 -1.46 16 17 C -0.16 -4.46 10.85 22.67 0.25 -4.22 16 18 C 0.00 0.03 12.03 85.18 1.02 1.06 16 19 N -0.28 -7.86 11.90 -57.15 -0.68 -8.54 16 20 N -0.27 -8.13 3.75 -356.08 -1.34 -9.47 16 21 C 0.08 1.97 10.81 127.77 1.38 3.35 16 22 H 0.03 1.48 6.05 -2.39 -0.01 1.47 16 23 H 0.04 1.72 7.82 -2.39 -0.02 1.70 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 3.77 6.64 -2.39 -0.02 3.75 16 26 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 29 H 0.23 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.87 6.15 -2.38 -0.01 2.85 16 Total: -1.00 -65.30 275.81 6.15 -59.16 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.12 Total: 13.11 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.90 Total: -5.06 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.76 Total: -69.49 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.14 Total: -41.29 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -65.30 6.15 -59.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188015405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.231 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds