Wall clock time and date at job start Sun Mar 29 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35891 * 117.00178 * 2 1 4 4 C 1.38798 * 120.02988 * 0.02562 * 3 2 1 5 5 C 1.38145 * 120.05557 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.11242 * 359.74773 * 5 4 3 7 7 C 1.50704 * 119.97654 * 180.25527 * 6 5 4 8 8 O 1.42906 * 109.46798 * 0.25059 * 7 6 5 9 9 C 1.34922 * 116.99673 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00031 * 0.02562 * 9 8 7 11 11 C 1.38641 * 119.99988 * 180.02562 * 9 8 7 12 12 N 1.31574 * 119.99770 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00062 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47124 * 59.99853 * 13 11 9 15 15 H 1.48498 * 109.47088 * 180.02562 * 13 11 9 16 16 H 1.48511 * 109.47004 * 300.00067 * 13 11 9 17 17 C 1.38750 * 120.05389 * 0.50871 * 6 5 4 18 18 O 1.35891 * 120.03171 * 179.77047 * 17 6 5 19 19 C 1.42903 * 117.00396 * 179.72455 * 18 17 6 20 20 C 1.38616 * 120.02656 * 180.02562 * 3 2 1 21 21 H 1.08998 * 109.46835 * 60.00391 * 1 2 3 22 22 H 1.08996 * 109.47233 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47186 * 300.00432 * 1 2 3 24 24 H 1.08000 * 119.96937 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.94392 * 180.02562 * 5 4 3 26 26 H 1.08998 * 109.47157 * 120.25588 * 7 6 5 27 27 H 1.08999 * 109.46822 * 240.25573 * 7 6 5 28 28 H 0.96998 * 120.00005 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.47382 * 179.97438 * 19 18 17 30 30 H 1.09001 * 109.46938 * 59.99709 * 19 18 17 31 31 H 1.09004 * 109.46926 * 299.99830 * 19 18 17 32 32 H 1.08003 * 120.05589 * 0.03821 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0005 5 6 1.9173 3.6064 0.0011 6 6 3.2972 3.6820 0.0063 7 6 3.9776 5.0267 0.0127 8 8 2.9905 6.0600 0.0180 9 6 3.4366 7.3333 0.0236 10 1 4.4979 7.5336 0.0234 11 6 2.5327 8.3845 0.0294 12 7 1.2398 8.1404 0.0290 13 14 3.1504 10.1474 0.0364 14 1 3.9732 10.3884 -1.1761 15 1 1.9928 11.0774 0.0427 16 1 3.9765 10.3777 1.2489 17 6 4.0568 2.5209 0.0004 18 8 5.4136 2.5958 0.0009 19 6 6.1317 1.3603 0.0007 20 6 3.4302 1.2839 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2121 2.3188 0.0014 25 1 1.3278 4.5114 0.0019 26 1 4.6004 5.1145 0.9029 27 1 4.5998 5.1232 -0.8770 28 1 0.6074 8.8758 0.0335 29 1 7.2028 1.5625 0.0007 30 1 5.8702 0.7882 -0.8895 31 1 5.8697 0.7877 0.8905 32 1 4.0197 0.3790 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199552343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:33 Heat of formation + Delta-G solvation = -104.702901 kcal Electronic energy + Delta-G solvation = -16554.746003 eV Core-core repulsion = 13674.170119 eV Total energy + Delta-G solvation = -2880.575884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53996 -39.92955 -38.54779 -37.20013 -34.02202 -32.15537 -31.31559 -28.57879 -28.08503 -26.98460 -25.83598 -23.08837 -22.25624 -19.87328 -19.45353 -17.85621 -17.37414 -17.01258 -16.97043 -16.43928 -16.41172 -15.75272 -15.74529 -15.57640 -15.05769 -14.16399 -13.89689 -13.54633 -13.38049 -13.12793 -12.84195 -12.77091 -12.41217 -12.27533 -12.06984 -11.81908 -11.80811 -11.39050 -11.27601 -10.19865 -9.59465 -8.91985 -8.17880 -5.87610 0.34554 0.37619 1.40436 1.48805 1.55553 2.16457 2.33648 2.46809 2.68461 3.15861 3.56175 3.86200 4.06153 4.23105 4.25646 4.33372 4.41866 4.42675 4.47786 4.55311 4.67572 4.70681 4.74185 4.77444 4.84021 5.13874 5.21809 5.34775 5.53551 5.67604 6.22118 6.27721 6.45740 7.24818 8.02862 9.06855 Molecular weight = 238.10amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.006052 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.975385 B = 4625.431200 C = 5588.650221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.159 3.841 4 C -0.242 4.242 5 C -0.031 4.031 6 C -0.170 4.170 7 C 0.127 3.873 8 O -0.326 6.326 9 C -0.385 4.385 10 H 0.071 0.929 11 C -0.038 4.038 12 N -0.937 5.937 13 Si 1.007 2.993 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.264 1.264 17 C 0.167 3.833 18 O -0.330 6.330 19 C 0.015 3.985 20 C -0.241 4.241 21 H 0.061 0.939 22 H 0.128 0.872 23 H 0.061 0.939 24 H 0.148 0.852 25 H 0.116 0.884 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -16.953 -0.067 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.113 3.887 4 C -0.261 4.261 5 C -0.049 4.049 6 C -0.171 4.171 7 C 0.050 3.950 8 O -0.242 6.242 9 C -0.463 4.463 10 H 0.089 0.911 11 C -0.231 4.231 12 N -0.581 5.581 13 Si 0.829 3.171 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.189 1.189 17 C 0.120 3.880 18 O -0.243 6.243 19 C -0.079 4.079 20 C -0.260 4.260 21 H 0.080 0.920 22 H 0.147 0.853 23 H 0.080 0.920 24 H 0.166 0.834 25 H 0.134 0.866 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.215 -16.974 -0.067 17.276 hybrid contribution 0.077 0.950 0.003 0.953 sum 3.292 -16.024 -0.064 16.359 Atomic orbital electron populations 1.23389 0.76288 1.05817 1.02269 1.86002 1.23553 1.25775 1.88316 1.18694 0.91727 0.84382 0.93869 1.21289 1.01142 0.91146 1.12487 1.20659 0.93304 0.97868 0.93093 1.19200 0.93999 0.92759 1.11124 1.20632 0.90412 0.85916 0.98060 1.85513 1.31700 1.13345 1.93626 1.21306 0.92690 0.81758 1.50562 0.91146 1.26210 0.95181 1.03482 0.98245 1.70169 1.01895 1.32977 1.53048 0.84806 0.77519 0.75517 0.79262 1.18911 1.20132 1.18915 1.18307 0.82886 0.91995 0.94768 1.86114 1.14659 1.35370 1.88184 1.23438 0.97405 0.84345 1.02662 1.20417 0.92852 0.97066 1.15630 0.92008 0.85343 0.92023 0.83402 0.86629 0.94988 0.94998 0.92950 0.86046 0.91264 0.91265 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -8.19 10.49 -92.33 -0.97 -9.16 16 3 C 0.16 4.89 6.68 22.49 0.15 5.04 16 4 C -0.24 -8.27 9.04 22.38 0.20 -8.07 16 5 C -0.03 -1.34 9.37 22.24 0.21 -1.13 16 6 C -0.17 -7.49 5.89 -19.75 -0.12 -7.60 16 7 C 0.13 6.40 5.87 71.24 0.42 6.82 16 8 O -0.33 -20.04 8.25 -81.91 -0.68 -20.72 16 9 C -0.38 -23.78 9.89 67.92 0.67 -23.11 16 10 H 0.07 4.08 7.77 -2.91 -0.02 4.05 16 11 C -0.04 -2.29 5.49 84.83 0.47 -1.82 16 12 N -0.94 -60.40 13.67 21.61 0.30 -60.11 16 13 Si 1.01 46.08 29.55 68.60 2.03 48.11 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 17 C 0.17 5.99 6.66 22.49 0.15 6.14 16 18 O -0.33 -10.63 9.92 -92.32 -0.92 -11.55 16 19 C 0.02 0.30 9.81 113.37 1.11 1.41 16 20 C -0.24 -7.27 8.97 22.46 0.20 -7.07 16 21 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 22 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 24 H 0.15 4.23 6.29 -2.91 -0.02 4.21 16 25 H 0.12 5.87 7.00 -2.91 -0.02 5.85 16 26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 31 H 0.07 1.15 7.66 -2.38 -0.02 1.13 16 32 H 0.16 3.80 6.30 -2.91 -0.02 3.78 16 Total: -1.00 -76.42 279.59 5.46 -70.96 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.12 Total: 10.44 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.58 Total: -27.99 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.56 Total: -41.42 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.42 5.46 -70.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199552343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.738 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds