Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 N 1.31126 * 126.55163 * 89.99777 * 11 10 9 13 13 C 1.34489 * 105.61796 * 180.02562 * 12 11 10 14 14 C 1.50706 * 126.29168 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.81952 * 15.57413 * 14 13 12 16 16 C 1.54381 * 109.83181 * 254.59124 * 14 13 12 17 17 C 1.55307 * 102.25195 * 219.12871 * 16 14 13 18 18 C 1.54943 * 100.94060 * 34.13650 * 17 16 14 19 19 O 1.43239 * 109.82552 * 136.45487 * 14 13 12 20 20 N 1.29945 * 107.42474 * 0.02562 * 13 12 11 21 21 O 1.21304 * 110.24804 * 359.69841 * 20 13 12 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 24 24 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 25 25 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 26 26 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 27 27 H 1.08998 * 110.84899 * 337.32352 * 16 14 13 28 28 H 1.09006 * 110.84411 * 100.94084 * 16 14 13 29 29 H 1.09000 * 111.12163 * 276.21666 * 17 16 14 30 30 H 1.09000 * 111.15878 * 152.07080 * 17 16 14 31 31 H 1.09002 * 110.30696 * 204.64326 * 18 17 16 32 32 H 1.08990 * 110.31349 * 82.46988 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 7 1.1010 -5.6428 -1.0569 13 6 0.4726 -6.7307 -0.5768 14 6 -0.1610 -7.8277 -1.3931 15 1 0.1897 -7.7712 -2.4236 16 6 -1.6981 -7.6897 -1.3525 17 6 -2.1594 -9.1696 -1.2567 18 6 -1.0184 -9.7787 -0.4036 19 8 0.1740 -9.1037 -0.8352 20 7 0.5121 -6.6622 0.7202 21 8 1.0982 -5.6594 1.0700 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6247 -2.5562 -0.8920 25 1 2.8720 -3.6035 -0.8927 26 1 2.8719 -3.6051 0.8873 27 1 -2.0140 -7.1272 -0.4740 28 1 -2.0701 -7.2257 -2.2660 29 1 -2.2027 -9.6321 -2.2427 30 1 -3.1185 -9.2503 -0.7451 31 1 -0.9360 -10.8493 -0.5912 32 1 -1.1966 -9.5919 0.6553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236179093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = 6.929194 kcal Electronic energy + Delta-G solvation = -16435.598519 eV Core-core repulsion = 13592.156117 eV Total energy + Delta-G solvation = -2843.442402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.12843 -39.61688 -35.52997 -34.41615 -32.57995 -32.31413 -30.40069 -29.30303 -25.84517 -24.31044 -23.04700 -22.00693 -21.60520 -20.17040 -17.64866 -17.43001 -16.67842 -16.25666 -16.19365 -15.12005 -14.55660 -14.10090 -13.81064 -13.40790 -13.30567 -12.46132 -12.21460 -12.04865 -12.00451 -11.60286 -11.51467 -11.14151 -11.00375 -10.98095 -10.76155 -10.60979 -10.14098 -10.09783 -9.85723 -9.34640 -9.17265 -8.45419 -6.10073 -4.14865 1.59833 2.53769 3.30003 3.33401 3.35161 3.38494 3.55431 3.92100 4.19720 4.38998 4.53179 4.61344 4.79716 4.96314 5.08180 5.26574 5.43219 5.49690 5.55563 5.62237 5.69470 5.90342 5.99951 6.10439 6.23514 6.41788 6.61985 6.71690 7.48055 7.55257 7.85351 8.20875 8.59546 8.90175 9.50102 11.01190 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.056396 B = 0.004459 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.367355 B = 6277.896972 C = 6508.763845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.028 4.028 11 C 0.214 3.786 12 N -0.491 5.491 13 C 0.148 3.852 14 C 0.178 3.822 15 H 0.114 0.886 16 C -0.144 4.144 17 C -0.153 4.153 18 C 0.048 3.952 19 O -0.367 6.367 20 N -0.382 5.382 21 O 0.070 5.930 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.626 -15.640 -2.058 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.068 4.068 11 C -0.005 4.005 12 N -0.226 5.226 13 C -0.125 4.125 14 C 0.118 3.882 15 H 0.131 0.869 16 C -0.183 4.183 17 C -0.191 4.191 18 C -0.028 4.028 19 O -0.284 6.284 20 N -0.092 5.092 21 O 0.012 5.988 22 H 0.073 0.927 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.974 -16.322 -1.953 16.705 hybrid contribution 0.239 1.200 0.087 1.227 sum -2.734 -15.122 -1.866 15.480 Atomic orbital electron populations 1.69956 1.06172 1.27086 1.49814 1.25006 0.94867 0.99433 0.94876 0.86561 0.79503 0.82644 0.78747 1.20068 1.21259 1.20071 1.21040 0.93160 0.90224 1.52070 0.92045 1.19156 0.93582 0.89818 0.98461 1.20767 0.97968 0.83568 1.04448 1.29633 0.94312 0.96938 0.79601 1.71858 1.16331 1.05130 1.29239 1.25965 1.00639 0.96994 0.88934 1.20757 0.93556 0.79156 0.94723 0.86887 1.23175 0.92819 0.97751 1.04562 1.23283 0.99575 0.94833 1.01402 1.23460 0.83783 0.97125 0.98415 1.88497 1.30801 1.28457 1.80680 1.74516 1.15430 1.03793 1.15505 1.85285 1.52147 1.25011 1.36318 0.92695 0.95809 0.95515 0.88161 0.89040 0.89985 0.88755 0.89892 0.89448 0.89242 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.21 4.19 7.77 -13.06 -0.10 4.09 16 12 N -0.49 -9.67 11.55 -9.87 -0.11 -9.78 16 13 C 0.15 2.69 6.97 -156.38 -1.09 1.60 16 14 C 0.18 2.53 4.09 -27.16 -0.11 2.42 16 15 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.14 -1.65 6.53 -24.78 -0.16 -1.81 16 17 C -0.15 -1.32 7.16 -24.48 -0.18 -1.49 16 18 C 0.05 0.50 7.78 38.18 0.30 0.80 16 19 O -0.37 -5.25 11.00 -35.23 -0.39 -5.64 16 20 N -0.38 -7.32 12.16 30.90 0.38 -6.95 16 21 O 0.07 1.36 11.31 18.11 0.20 1.57 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 26 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.08 1.06 7.84 -51.93 -0.41 0.66 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -30.90 281.07 -6.20 -37.10 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.18 Total: -3.66 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.05 Total: -7.36 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 1.00 Total: -42.05 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.18 Total: -4.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.90 -6.20 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.026 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds