Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 N 1.31126 * 126.55163 * 89.99777 * 11 10 9 13 13 C 1.34489 * 105.61796 * 180.02562 * 12 11 10 14 14 C 1.50706 * 126.29168 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.81952 * 15.57413 * 14 13 12 16 16 C 1.54381 * 109.83181 * 254.59124 * 14 13 12 17 17 C 1.55307 * 102.25195 * 219.12871 * 16 14 13 18 18 C 1.54943 * 100.94060 * 34.13650 * 17 16 14 19 19 O 1.43239 * 109.82552 * 136.45487 * 14 13 12 20 20 N 1.29945 * 107.42474 * 0.02562 * 13 12 11 21 21 O 1.21304 * 110.24804 * 359.69841 * 20 13 12 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 24 24 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 25 25 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 26 26 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 27 27 H 1.08998 * 110.84899 * 337.32352 * 16 14 13 28 28 H 1.09006 * 110.84411 * 100.94084 * 16 14 13 29 29 H 1.09000 * 111.12163 * 276.21666 * 17 16 14 30 30 H 1.09000 * 111.15878 * 152.07080 * 17 16 14 31 31 H 1.09002 * 110.30696 * 204.64326 * 18 17 16 32 32 H 1.08990 * 110.31349 * 82.46988 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 7 1.1010 -5.6428 -1.0569 13 6 0.4726 -6.7307 -0.5768 14 6 -0.1610 -7.8277 -1.3931 15 1 0.1897 -7.7712 -2.4236 16 6 -1.6981 -7.6897 -1.3525 17 6 -2.1594 -9.1696 -1.2567 18 6 -1.0184 -9.7787 -0.4036 19 8 0.1740 -9.1037 -0.8352 20 7 0.5121 -6.6622 0.7202 21 8 1.0982 -5.6594 1.0700 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6247 -2.5562 -0.8920 25 1 2.8720 -3.6035 -0.8927 26 1 2.8719 -3.6051 0.8873 27 1 -2.0140 -7.1272 -0.4740 28 1 -2.0701 -7.2257 -2.2660 29 1 -2.2027 -9.6321 -2.2427 30 1 -3.1185 -9.2503 -0.7451 31 1 -0.9360 -10.8493 -0.5912 32 1 -1.1966 -9.5919 0.6553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236179093.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = -14.693739 kcal Electronic energy + Delta-G solvation = -16436.536160 eV Core-core repulsion = 13592.156117 eV Total energy + Delta-G solvation = -2844.380042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.62843 -40.59045 -37.06782 -36.15836 -34.37735 -33.24588 -32.06671 -30.43305 -27.74930 -25.53275 -24.65359 -23.28555 -22.78775 -21.59173 -19.19833 -18.78540 -18.42450 -17.53914 -17.25109 -16.49877 -16.24798 -15.70571 -15.02824 -14.73102 -14.37643 -14.23703 -13.60419 -13.43138 -13.42066 -12.89821 -12.77661 -12.66820 -12.39328 -12.26588 -12.17930 -11.95040 -11.91547 -11.81584 -11.36650 -10.98606 -10.73131 -10.55205 -8.19798 -6.31951 0.07725 1.08938 1.47089 1.49817 1.57327 1.82963 2.34542 2.45897 2.83665 3.04788 3.15691 3.45375 3.75175 3.76731 4.03405 4.20581 4.31992 4.47371 4.52037 4.59690 4.69877 4.71456 4.81853 4.87595 4.92066 4.94667 5.12829 5.43119 5.52741 5.76800 5.77741 6.13409 6.83313 7.08716 7.38300 8.92481 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.056396 B = 0.004459 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.367355 B = 6277.896972 C = 6508.763845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.014 4.014 11 C 0.209 3.791 12 N -0.505 5.505 13 C 0.150 3.850 14 C 0.172 3.828 15 H 0.126 0.874 16 C -0.145 4.145 17 C -0.138 4.138 18 C 0.038 3.962 19 O -0.388 6.388 20 N -0.396 5.396 21 O 0.061 5.939 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.005 1.005 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -16.270 -2.662 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.097 0.903 9 C -0.004 4.004 10 C -0.053 4.053 11 C -0.010 4.010 12 N -0.240 5.240 13 C -0.124 4.124 14 C 0.112 3.888 15 H 0.144 0.856 16 C -0.183 4.183 17 C -0.175 4.175 18 C -0.037 4.037 19 O -0.306 6.306 20 N -0.108 5.108 21 O 0.006 5.994 22 H 0.073 0.927 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.384 -16.963 -2.540 17.317 hybrid contribution 0.019 1.309 0.278 1.339 sum -2.365 -15.653 -2.262 15.992 Atomic orbital electron populations 1.70106 1.08076 1.28019 1.51285 1.25989 0.95663 1.03558 0.94465 0.85422 0.78113 0.77638 0.79415 1.18930 1.21457 1.18811 1.21543 0.94194 0.90976 1.51130 0.90345 1.18946 0.93958 0.91821 0.95668 1.20554 0.96766 0.81544 1.06408 1.29609 0.94462 0.97126 0.79842 1.71865 1.16750 1.05844 1.29537 1.26776 0.99452 0.97234 0.88895 1.21094 0.95039 0.78297 0.94392 0.85636 1.23204 0.90893 0.99846 1.04379 1.23289 0.99513 0.92230 1.02493 1.23732 0.83361 0.98393 0.98235 1.88476 1.33036 1.28294 1.80793 1.74503 1.16124 1.03944 1.16258 1.85265 1.52423 1.25283 1.36409 0.92746 0.98430 0.98651 0.86682 0.86601 0.92118 0.87133 0.87615 0.87568 0.86604 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -28.71 9.11 25.60 0.23 -28.48 16 8 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.03 1.73 4.96 29.85 0.15 1.88 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.21 8.21 7.77 88.38 0.69 8.90 16 12 N -0.50 -19.89 11.55 -303.21 -3.50 -23.39 16 13 C 0.15 5.44 6.97 138.47 0.97 6.40 16 14 C 0.17 4.72 4.09 30.32 0.12 4.84 16 15 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 16 C -0.14 -3.10 6.53 31.86 0.21 -2.90 16 17 C -0.14 -1.99 7.16 32.05 0.23 -1.76 16 18 C 0.04 0.72 7.78 72.65 0.56 1.29 16 19 O -0.39 -10.66 11.00 -148.98 -1.64 -12.30 16 20 N -0.40 -15.31 12.16 -60.32 -0.73 -16.04 16 21 O 0.06 2.40 11.31 74.87 0.85 3.24 16 22 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 26 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.06 1.56 7.84 -2.39 -0.02 1.54 16 28 H 0.11 1.98 8.14 -2.38 -0.02 1.97 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.02 281.07 2.19 -64.83 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.11 Total: 4.32 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.79 Total: -9.65 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.95 Total: -94.79 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.79 Total: -9.05 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -67.02 2.19 -64.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179093.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.134 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds