Wall clock time and date at job start Sun Mar 29 2020 21:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47325 * 270.00401 * 3 2 1 5 5 H 1.48502 * 109.47080 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.46998 * 150.00306 * 3 2 1 7 7 C 1.37876 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99672 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46839 * 179.97438 * 10 9 7 12 12 N 1.31132 * 126.55072 * 90.00569 * 11 10 9 13 13 C 1.34501 * 105.61273 * 179.97438 * 12 11 10 14 14 C 1.50699 * 126.28492 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.35501 * 345.68729 * 14 13 12 16 16 C 1.54940 * 110.31016 * 107.83336 * 14 13 12 17 17 C 1.55300 * 100.94415 * 155.35699 * 16 14 13 18 18 C 1.54377 * 102.25502 * 325.86750 * 17 16 14 19 19 O 1.43245 * 107.58529 * 21.35358 * 18 17 16 20 20 N 1.29942 * 107.42403 * 0.23878 * 13 12 11 21 21 O 1.21305 * 110.25399 * 359.57787 * 20 13 12 22 22 H 0.96998 * 119.99892 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46757 * 59.99886 * 9 7 2 24 24 H 1.08996 * 109.46872 * 299.99801 * 9 7 2 25 25 H 1.08998 * 109.47119 * 59.99743 * 10 9 7 26 26 H 1.08996 * 109.47077 * 300.00193 * 10 9 7 27 27 H 1.09007 * 111.12756 * 37.43650 * 16 14 13 28 28 H 1.09003 * 111.16152 * 273.29338 * 16 14 13 29 29 H 1.09006 * 110.85287 * 207.67375 * 17 16 14 30 30 H 1.09007 * 110.84948 * 84.05944 * 17 16 14 31 31 H 1.09000 * 109.83189 * 261.84669 * 18 17 16 32 32 H 1.09004 * 109.91014 * 140.91129 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 7 6.3103 -2.6362 1.0506 13 6 7.5661 -2.6369 0.5689 14 6 8.8338 -2.6364 1.3837 15 1 8.6174 -2.3827 2.4214 16 6 9.5266 -4.0198 1.3015 17 6 10.9995 -3.6304 1.6028 18 6 11.1084 -2.2338 0.9539 19 8 9.7813 -1.7090 0.8310 20 7 7.4854 -2.6324 -0.7280 21 8 6.3235 -2.6375 -1.0765 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1502 0.8892 27 1 9.4299 -4.4490 0.3042 28 1 9.1374 -4.7004 2.0588 29 1 11.6899 -4.3312 1.1333 30 1 11.1737 -3.5735 2.6773 31 1 11.5652 -2.3188 -0.0321 32 1 11.7087 -1.5775 1.5841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236179952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:58 Heat of formation + Delta-G solvation = 11.887977 kcal Electronic energy + Delta-G solvation = -16437.436968 eV Core-core repulsion = 13594.209595 eV Total energy + Delta-G solvation = -2843.227373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.27649 -39.68336 -35.68966 -34.56330 -32.60971 -32.40665 -30.75509 -29.41997 -26.22752 -24.42618 -23.10472 -22.01887 -21.40618 -20.27047 -17.75854 -17.60595 -17.00147 -16.47263 -16.19129 -15.23351 -14.41121 -14.18639 -13.90340 -13.66367 -13.37281 -12.76525 -12.37001 -12.17005 -12.10914 -11.84305 -11.73052 -11.34894 -11.15242 -11.07734 -10.78027 -10.51394 -10.20210 -9.90691 -9.88394 -9.39742 -9.36542 -8.61980 -6.12929 -4.13572 1.45520 2.36518 3.20138 3.28742 3.36524 3.37868 3.41371 3.87777 4.11217 4.38237 4.39431 4.52487 4.67268 4.87516 4.92073 5.21176 5.30709 5.37312 5.44548 5.53001 5.56064 5.77627 5.86706 5.94664 6.03671 6.27078 6.44460 6.66247 7.03043 7.16164 7.62029 8.38791 8.45872 8.88949 9.47927 10.99630 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046140 B = 0.004915 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.702958 B = 5695.346467 C = 5994.075252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.019 4.019 11 C 0.209 3.791 12 N -0.488 5.488 13 C 0.158 3.842 14 C 0.177 3.823 15 H 0.105 0.895 16 C -0.144 4.144 17 C -0.153 4.153 18 C 0.051 3.949 19 O -0.369 6.369 20 N -0.375 5.375 21 O 0.073 5.927 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.020 0.980 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.809 -7.650 2.773 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.097 0.903 9 C -0.047 4.047 10 C -0.058 4.058 11 C -0.010 4.010 12 N -0.222 5.222 13 C -0.116 4.116 14 C 0.118 3.882 15 H 0.123 0.877 16 C -0.183 4.183 17 C -0.191 4.191 18 C -0.026 4.026 19 O -0.287 6.287 20 N -0.084 5.084 21 O 0.015 5.985 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.116 0.884 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.423 -7.320 2.601 21.850 hybrid contribution 0.281 0.828 0.014 0.875 sum 20.704 -6.492 2.615 21.855 Atomic orbital electron populations 1.69890 1.06234 1.27158 1.50230 1.24937 0.94714 0.99091 0.94165 0.86836 0.80449 0.83688 0.78754 1.20049 1.21112 1.19008 1.20925 0.88315 0.94962 1.52130 0.90339 1.19634 0.97921 0.89572 0.97577 1.20550 0.76902 1.03058 1.05278 1.29663 0.99463 0.92236 0.79616 1.71868 0.99296 1.21863 1.29220 1.25451 0.94853 1.02604 0.88643 1.20891 0.82951 0.89623 0.94702 0.87744 1.23303 0.94638 0.96351 1.04016 1.23130 0.96735 0.97084 1.02119 1.23178 0.84405 0.94113 1.00892 1.88510 1.15314 1.42278 1.82638 1.74563 0.97884 1.20483 1.15492 1.85310 1.11320 1.65655 1.36252 0.92477 0.95531 0.96219 0.88400 0.87535 0.89841 0.88867 0.89501 0.89949 0.91012 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.53 -14.21 9.66 -34.44 -0.33 -14.54 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.19 4.02 -27.88 -0.11 -0.31 16 10 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 11 C 0.21 3.85 7.77 -13.06 -0.10 3.75 16 12 N -0.49 -9.08 11.55 -9.87 -0.11 -9.19 16 13 C 0.16 2.73 7.15 -156.37 -1.12 1.61 16 14 C 0.18 2.40 4.00 -26.86 -0.11 2.30 16 15 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -1.43 6.56 -24.49 -0.16 -1.59 16 17 C -0.15 -1.13 7.02 -24.79 -0.17 -1.31 16 18 C 0.05 0.48 7.79 37.88 0.30 0.78 16 19 O -0.37 -5.29 11.02 -35.23 -0.39 -5.68 16 20 N -0.38 -6.88 12.16 30.90 0.38 -6.51 16 21 O 0.07 1.35 11.31 18.10 0.20 1.55 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 24 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 25 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 277.71 15.07 4.18 4.18 Total: -1.00 -31.61 277.71 -5.86 -37.47 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -4.15 Total: -4.72 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.07 Total: -7.85 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.04 Total: -41.77 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.18 Total: -4.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.61 -5.86 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.354 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds