Wall clock time and date at job start Sun Mar 29 2020 21:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47325 * 270.00401 * 3 2 1 5 5 H 1.48502 * 109.47080 * 30.00219 * 3 2 1 6 6 H 1.48498 * 109.46998 * 150.00306 * 3 2 1 7 7 C 1.37876 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00227 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99672 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46839 * 179.97438 * 10 9 7 12 12 N 1.31132 * 126.55072 * 90.00569 * 11 10 9 13 13 C 1.34501 * 105.61273 * 179.97438 * 12 11 10 14 14 C 1.50699 * 126.28492 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.35501 * 345.68729 * 14 13 12 16 16 C 1.54940 * 110.31016 * 107.83336 * 14 13 12 17 17 C 1.55300 * 100.94415 * 155.35699 * 16 14 13 18 18 C 1.54377 * 102.25502 * 325.86750 * 17 16 14 19 19 O 1.43245 * 107.58529 * 21.35358 * 18 17 16 20 20 N 1.29942 * 107.42403 * 0.23878 * 13 12 11 21 21 O 1.21305 * 110.25399 * 359.57787 * 20 13 12 22 22 H 0.96998 * 119.99892 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.46757 * 59.99886 * 9 7 2 24 24 H 1.08996 * 109.46872 * 299.99801 * 9 7 2 25 25 H 1.08998 * 109.47119 * 59.99743 * 10 9 7 26 26 H 1.08996 * 109.47077 * 300.00193 * 10 9 7 27 27 H 1.09007 * 111.12756 * 37.43650 * 16 14 13 28 28 H 1.09003 * 111.16152 * 273.29338 * 16 14 13 29 29 H 1.09006 * 110.85287 * 207.67375 * 17 16 14 30 30 H 1.09007 * 110.84948 * 84.05944 * 17 16 14 31 31 H 1.09000 * 109.83189 * 261.84669 * 18 17 16 32 32 H 1.09004 * 109.91014 * 140.91129 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 7 6.3103 -2.6362 1.0506 13 6 7.5661 -2.6369 0.5689 14 6 8.8338 -2.6364 1.3837 15 1 8.6174 -2.3827 2.4214 16 6 9.5266 -4.0198 1.3015 17 6 10.9995 -3.6304 1.6028 18 6 11.1084 -2.2338 0.9539 19 8 9.7813 -1.7090 0.8310 20 7 7.4854 -2.6324 -0.7280 21 8 6.3235 -2.6375 -1.0765 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1502 0.8892 27 1 9.4299 -4.4490 0.3042 28 1 9.1374 -4.7004 2.0588 29 1 11.6899 -4.3312 1.1333 30 1 11.1737 -3.5735 2.6773 31 1 11.5652 -2.3188 -0.0321 32 1 11.7087 -1.5775 1.5841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236179952.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:57 Heat of formation + Delta-G solvation = -10.800314 kcal Electronic energy + Delta-G solvation = -16438.420806 eV Core-core repulsion = 13594.209595 eV Total energy + Delta-G solvation = -2844.211211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.67277 -40.56458 -37.12355 -36.20914 -34.43545 -33.24715 -32.38250 -30.43726 -28.04795 -25.53100 -24.54833 -23.05579 -22.68866 -21.65240 -19.28336 -19.01558 -18.64260 -17.52721 -17.22177 -16.38556 -16.17722 -15.72096 -15.13586 -14.83406 -14.72917 -14.29963 -13.68649 -13.66549 -13.34759 -12.92490 -12.86551 -12.77009 -12.38694 -12.27984 -12.10768 -11.96339 -11.84150 -11.79007 -11.45823 -10.99023 -10.77522 -10.67639 -8.30060 -6.34202 0.04761 1.02490 1.34968 1.37912 1.47469 1.79009 2.25639 2.34376 2.87120 3.05097 3.05708 3.44989 3.72199 3.82077 4.03879 4.18580 4.26336 4.38697 4.41415 4.53885 4.69468 4.74330 4.80924 4.85612 4.87504 4.92573 5.14089 5.23487 5.34569 5.57115 5.81380 6.22839 6.73306 7.06527 7.30500 8.85600 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046140 B = 0.004915 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.702958 B = 5695.346467 C = 5994.075252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.055 0.945 9 C -0.005 4.005 10 C -0.008 4.008 11 C 0.208 3.792 12 N -0.500 5.500 13 C 0.159 3.841 14 C 0.168 3.832 15 H 0.115 0.885 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.039 3.961 19 O -0.402 6.402 20 N -0.391 5.391 21 O 0.067 5.933 22 H 0.268 0.732 23 H 0.019 0.981 24 H 0.022 0.978 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.110 -7.905 3.360 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.044 4.044 10 C -0.047 4.047 11 C -0.011 4.011 12 N -0.235 5.235 13 C -0.114 4.114 14 C 0.109 3.891 15 H 0.132 0.868 16 C -0.178 4.178 17 C -0.176 4.176 18 C -0.036 4.036 19 O -0.321 6.321 20 N -0.101 5.101 21 O 0.011 5.989 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.040 0.960 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.736 -7.587 3.176 24.178 hybrid contribution -0.404 0.852 -0.164 0.958 sum 22.332 -6.734 3.013 23.519 Atomic orbital electron populations 1.70013 1.07878 1.28167 1.52138 1.25758 0.95425 1.02726 0.94213 0.85876 0.79296 0.79642 0.79168 1.19149 1.20701 1.18334 1.21245 0.90515 0.94022 1.50668 0.92643 1.19495 0.95210 0.92547 0.97148 1.20349 0.77081 1.00446 1.06825 1.29516 0.99307 0.92492 0.79828 1.71880 1.00030 1.22117 1.29482 1.26201 0.95736 1.00903 0.88593 1.21235 0.81904 0.91755 0.94192 0.86793 1.23311 0.96052 0.94511 1.03954 1.23138 0.95179 0.95899 1.03424 1.23469 0.82519 0.95815 1.01822 1.88469 1.17234 1.43413 1.82989 1.74556 0.97767 1.21559 1.16241 1.85295 1.11453 1.65873 1.36262 0.92313 0.96300 0.95966 0.86479 0.86617 0.91124 0.87116 0.87395 0.87924 0.90822 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 44.01 27.47 68.60 1.88 45.90 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.82 6.54 99.48 0.65 -11.16 16 7 C -0.53 -28.53 9.66 25.60 0.25 -28.28 16 8 H 0.06 3.18 7.99 -2.91 -0.02 3.16 16 9 C -0.01 -0.24 4.02 29.85 0.12 -0.12 16 10 C -0.01 -0.29 5.78 29.85 0.17 -0.12 16 11 C 0.21 7.41 7.77 88.38 0.69 8.10 16 12 N -0.50 -18.03 11.55 -303.18 -3.50 -21.53 16 13 C 0.16 5.33 7.15 138.46 0.99 6.32 16 14 C 0.17 4.28 4.00 30.51 0.12 4.40 16 15 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 16 C -0.14 -2.44 6.56 32.05 0.21 -2.23 16 17 C -0.14 -1.59 7.02 31.85 0.22 -1.36 16 18 C 0.04 0.66 7.79 72.45 0.56 1.22 16 19 O -0.40 -10.96 11.02 -148.98 -1.64 -12.60 16 20 N -0.39 -14.02 12.16 -60.30 -0.73 -14.75 16 21 O 0.07 2.42 11.31 74.82 0.85 3.27 16 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 23 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 24 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 25 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 26 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.07 1.42 8.05 -2.38 -0.02 1.40 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -67.61 277.71 2.01 -65.60 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: 1.06 Total: 1.57 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 3.80 Total: -10.65 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.94 Total: -93.07 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.80 Total: -9.33 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -67.61 2.01 -65.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179952.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.799 kcal (2) G-P(sol) polarization free energy of solvation -67.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds