Wall clock time and date at job start Sun Mar 29 2020 22:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30019 * 127.33219 * 2 1 4 4 O 1.20664 * 112.30099 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15498 * 0.02562 * 4 3 2 6 6 C 1.37362 * 106.34146 * 359.73733 * 5 4 3 7 7 C 1.47402 * 128.56317 * 180.23913 * 6 5 4 8 8 O 1.21611 * 120.00135 * 141.06258 * 7 6 5 9 9 N 1.34774 * 119.99982 * 321.05970 * 7 6 5 10 10 C 1.46498 * 119.99987 * 5.20622 * 9 7 6 11 11 C 1.46504 * 119.99930 * 185.20632 * 9 7 6 12 12 H 1.08999 * 109.47282 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46929 * 239.99839 * 11 9 7 14 14 C 1.50702 * 109.47116 * 120.00209 * 11 9 7 15 15 H 1.08005 * 119.99829 * 359.97438 * 14 11 9 16 16 C 1.37871 * 120.00122 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99751 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00057 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47399 * 90.00091 * 18 16 14 20 20 H 1.48502 * 109.46841 * 209.99827 * 18 16 14 21 21 H 1.48497 * 109.47157 * 329.99648 * 18 16 14 22 22 H 1.09002 * 109.47168 * 90.02694 * 1 2 3 23 23 H 1.09000 * 109.47227 * 210.02169 * 1 2 3 24 24 H 1.08994 * 109.47566 * 330.02369 * 1 2 3 25 25 H 1.08000 * 126.82731 * 180.02562 * 5 4 3 26 26 H 1.09002 * 109.47443 * 84.50374 * 10 9 7 27 27 H 1.09001 * 109.47089 * 204.50646 * 10 9 7 28 28 H 1.09002 * 109.47181 * 324.50148 * 10 9 7 29 29 H 1.08999 * 109.47065 * 60.00004 * 13 11 9 30 30 H 1.08995 * 109.47068 * 179.97438 * 13 11 9 31 31 H 1.08999 * 109.47259 * 300.00161 * 13 11 9 32 32 H 0.97000 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 2.3992 -1.1695 0.0057 7 6 2.0401 -2.5991 0.0127 8 8 1.0991 -2.9865 0.6785 9 7 2.7548 -3.4770 -0.7188 10 6 3.9557 -3.0315 -1.4297 11 6 2.3306 -4.8767 -0.8030 12 1 1.4247 -5.0180 -0.2136 13 6 3.4392 -5.7792 -0.2576 14 6 2.0553 -5.2326 -2.2413 15 1 2.1831 -4.4901 -3.0152 16 6 1.6394 -6.5055 -2.5691 17 7 1.4833 -7.4094 -1.6266 18 14 1.2974 -6.9463 -4.3518 19 1 2.5406 -7.4583 -4.9823 20 1 0.2456 -7.9931 -4.4098 21 1 0.8341 -5.7382 -5.0804 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8901 0.5134 25 1 4.5967 -1.1194 0.0011 26 1 4.8083 -3.0512 -0.7508 27 1 4.1467 -3.6961 -2.2723 28 1 3.8057 -2.0155 -1.7952 29 1 3.6384 -5.5219 0.7827 30 1 3.1235 -6.8206 -0.3198 31 1 4.3454 -5.6381 -0.8467 32 1 1.1910 -8.3051 -1.8572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259697846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:51 Heat of formation + Delta-G solvation = 26.586826 kcal Electronic energy + Delta-G solvation = -17157.284157 eV Core-core repulsion = 14314.694174 eV Total energy + Delta-G solvation = -2842.589983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.74254 -39.04738 -35.48183 -34.29786 -33.14352 -31.77463 -29.39563 -28.49252 -26.41440 -25.29706 -24.30779 -21.18992 -21.04762 -19.01060 -17.61178 -17.19867 -16.65119 -16.03800 -15.52650 -14.60902 -14.49537 -13.97806 -13.21395 -13.18468 -12.92807 -12.58188 -12.46283 -12.28030 -11.76237 -11.56327 -11.16537 -11.10266 -10.90338 -10.78560 -10.33730 -10.24123 -9.75254 -9.53621 -9.30960 -9.18564 -8.49828 -7.73522 -6.13913 -4.22598 1.37303 1.98458 3.08957 3.22409 3.30006 3.32352 3.44740 3.86768 4.26750 4.34454 4.49739 5.09419 5.17013 5.18704 5.46351 5.60816 5.64396 5.73967 5.81551 5.84401 6.24695 6.27362 6.68598 6.75958 6.97816 7.30482 7.43521 7.63859 7.93603 8.10380 8.31573 8.38702 8.72622 8.90323 9.44204 10.91458 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.006679 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.868613 B = 4191.249991 C = 4308.761198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.061 3.939 3 N -0.366 5.366 4 O 0.089 5.911 5 C -0.025 4.025 6 C -0.231 4.231 7 C 0.580 3.420 8 O -0.539 6.539 9 N -0.582 5.582 10 C 0.075 3.925 11 C 0.259 3.741 12 H 0.065 0.935 13 C -0.147 4.147 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.225 0.775 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 10.554 1.110 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 N -0.074 5.074 4 O 0.029 5.971 5 C -0.107 4.107 6 C -0.239 4.239 7 C 0.365 3.635 8 O -0.418 6.418 9 N -0.312 5.312 10 C -0.069 4.069 11 C 0.160 3.840 12 H 0.083 0.917 13 C -0.205 4.205 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.199 1.199 22 H 0.100 0.900 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.242 0.758 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.357 11.418 1.471 12.309 hybrid contribution 0.001 -1.191 -1.061 1.595 sum 4.357 10.227 0.410 11.125 Atomic orbital electron populations 1.20261 0.85202 1.04476 1.03728 1.24832 0.98841 0.86547 0.99864 1.73599 0.89401 1.23741 1.20699 1.84510 1.21455 1.23333 1.67762 1.26513 1.00476 0.83499 1.00163 1.22676 0.92716 0.96552 1.11925 1.16923 0.83149 0.82791 0.80597 1.90751 1.29624 1.78866 1.42587 1.48163 1.25459 1.11691 1.45889 1.21823 0.87081 1.00203 0.97789 1.19024 0.94875 0.72897 0.97246 0.91692 1.22093 0.98177 1.04339 0.95898 1.21305 1.46564 0.96807 0.92144 0.92158 1.24886 0.94950 0.96141 0.97697 1.69876 1.46150 1.04255 1.32127 0.86477 0.78084 0.78274 0.84477 1.20547 1.21026 1.19905 0.89951 0.88535 0.90508 0.75847 0.93690 0.89389 0.92641 0.96868 0.88694 0.95058 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.49 36.00 0.38 -0.73 16 2 C 0.06 0.99 7.59 -79.77 -0.61 0.38 16 3 N -0.37 -5.65 12.01 34.78 0.42 -5.23 16 4 O 0.09 1.22 11.06 18.65 0.21 1.42 16 5 C -0.03 -0.32 10.14 30.41 0.31 -0.01 16 6 C -0.23 -3.88 5.64 -102.89 -0.58 -4.46 16 7 C 0.58 12.06 7.64 -12.53 -0.10 11.96 16 8 O -0.54 -13.16 15.79 5.27 0.08 -13.08 16 9 N -0.58 -12.04 2.75 -176.54 -0.49 -12.53 16 10 C 0.07 1.18 8.06 59.85 0.48 1.66 16 11 C 0.26 6.43 2.63 -69.08 -0.18 6.24 16 12 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 13 C -0.15 -3.39 8.97 37.16 0.33 -3.05 16 14 C -0.53 -13.90 7.95 -34.44 -0.27 -14.18 16 15 H 0.06 1.56 7.43 -52.48 -0.39 1.17 16 16 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 18 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 23 H 0.10 1.49 7.47 -51.93 -0.39 1.10 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.23 1.95 6.65 -52.49 -0.35 1.60 16 26 H 0.04 0.57 7.51 -51.93 -0.39 0.18 16 27 H 0.09 1.48 7.11 -51.93 -0.37 1.11 16 28 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 273.73 15.07 4.13 4.13 Total: -1.00 -30.87 273.73 -4.05 -34.92 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.67 Total: -0.78 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.33 Total: -0.52 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.56 Total: -41.63 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.29 Total: -11.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.87 -4.05 -34.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds