Wall clock time and date at job start Sun Mar 29 2020 22:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30019 * 127.33219 * 2 1 4 4 O 1.20664 * 112.30099 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15498 * 0.02562 * 4 3 2 6 6 C 1.37362 * 106.34146 * 359.73733 * 5 4 3 7 7 C 1.47402 * 128.56317 * 180.23913 * 6 5 4 8 8 O 1.21611 * 120.00135 * 141.06258 * 7 6 5 9 9 N 1.34774 * 119.99982 * 321.05970 * 7 6 5 10 10 C 1.46498 * 119.99987 * 5.20622 * 9 7 6 11 11 C 1.46504 * 119.99930 * 185.20632 * 9 7 6 12 12 H 1.08999 * 109.47282 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46929 * 239.99839 * 11 9 7 14 14 C 1.50702 * 109.47116 * 120.00209 * 11 9 7 15 15 H 1.08005 * 119.99829 * 359.97438 * 14 11 9 16 16 C 1.37871 * 120.00122 * 180.02562 * 14 11 9 17 17 N 1.31515 * 119.99751 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00057 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47399 * 90.00091 * 18 16 14 20 20 H 1.48502 * 109.46841 * 209.99827 * 18 16 14 21 21 H 1.48497 * 109.47157 * 329.99648 * 18 16 14 22 22 H 1.09002 * 109.47168 * 90.02694 * 1 2 3 23 23 H 1.09000 * 109.47227 * 210.02169 * 1 2 3 24 24 H 1.08994 * 109.47566 * 330.02369 * 1 2 3 25 25 H 1.08000 * 126.82731 * 180.02562 * 5 4 3 26 26 H 1.09002 * 109.47443 * 84.50374 * 10 9 7 27 27 H 1.09001 * 109.47089 * 204.50646 * 10 9 7 28 28 H 1.09002 * 109.47181 * 324.50148 * 10 9 7 29 29 H 1.08999 * 109.47065 * 60.00004 * 13 11 9 30 30 H 1.08995 * 109.47068 * 179.97438 * 13 11 9 31 31 H 1.08999 * 109.47259 * 300.00161 * 13 11 9 32 32 H 0.97000 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6494 -0.6007 0.0004 6 6 2.3992 -1.1695 0.0057 7 6 2.0401 -2.5991 0.0127 8 8 1.0991 -2.9865 0.6785 9 7 2.7548 -3.4770 -0.7188 10 6 3.9557 -3.0315 -1.4297 11 6 2.3306 -4.8767 -0.8030 12 1 1.4247 -5.0180 -0.2136 13 6 3.4392 -5.7792 -0.2576 14 6 2.0553 -5.2326 -2.2413 15 1 2.1831 -4.4901 -3.0152 16 6 1.6394 -6.5055 -2.5691 17 7 1.4833 -7.4094 -1.6266 18 14 1.2974 -6.9463 -4.3518 19 1 2.5406 -7.4583 -4.9823 20 1 0.2456 -7.9931 -4.4098 21 1 0.8341 -5.7382 -5.0804 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3634 0.8901 0.5134 25 1 4.5967 -1.1194 0.0011 26 1 4.8083 -3.0512 -0.7508 27 1 4.1467 -3.6961 -2.2723 28 1 3.8057 -2.0155 -1.7952 29 1 3.6384 -5.5219 0.7827 30 1 3.1235 -6.8206 -0.3198 31 1 4.3454 -5.6381 -0.8467 32 1 1.1910 -8.3051 -1.8572 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259697846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:50 Heat of formation + Delta-G solvation = 6.209021 kcal Electronic energy + Delta-G solvation = -17158.167805 eV Core-core repulsion = 14314.694174 eV Total energy + Delta-G solvation = -2843.473631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.92443 -40.66751 -37.21136 -35.53838 -34.91430 -33.18074 -31.12307 -29.67640 -27.80420 -27.30377 -25.72552 -22.82734 -22.20793 -20.56007 -18.81074 -18.60359 -18.37177 -17.61950 -17.20564 -16.28880 -16.07634 -15.37193 -14.79780 -14.30622 -14.29101 -14.20833 -13.81165 -13.54599 -13.51784 -13.06424 -12.90222 -12.72442 -12.63919 -12.32276 -12.20221 -12.13835 -11.21612 -11.01856 -10.90327 -10.64976 -10.51017 -9.40576 -8.15619 -6.32221 0.22990 0.74813 1.41972 1.43813 1.53138 1.80323 2.07890 2.37661 2.51127 3.05371 3.13034 3.36266 3.80106 4.00144 4.37252 4.41604 4.55953 4.58390 4.69176 4.74124 4.78735 4.92292 5.01609 5.06414 5.12427 5.47115 5.57151 5.65538 6.02135 6.14753 6.71176 6.75139 7.18923 7.23552 7.41774 8.88919 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.006679 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.868613 B = 4191.249991 C = 4308.761198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 N -0.373 5.373 4 O 0.103 5.897 5 C 0.023 3.977 6 C -0.271 4.271 7 C 0.577 3.423 8 O -0.592 6.592 9 N -0.587 5.587 10 C 0.067 3.933 11 C 0.263 3.737 12 H 0.011 0.989 13 C -0.132 4.132 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.272 0.728 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 12.008 -0.018 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.081 5.081 4 O 0.043 5.957 5 C -0.059 4.059 6 C -0.279 4.279 7 C 0.365 3.635 8 O -0.474 6.474 9 N -0.317 5.317 10 C -0.074 4.074 11 C 0.162 3.838 12 H 0.029 0.971 13 C -0.191 4.191 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.287 0.713 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.476 12.911 0.325 14.448 hybrid contribution -0.607 -1.596 -0.675 1.836 sum 5.869 11.315 -0.350 12.752 Atomic orbital electron populations 1.20273 0.84676 1.04405 1.04270 1.25091 0.99664 0.86573 1.00041 1.73611 0.89831 1.23498 1.21180 1.84515 1.20709 1.23616 1.66859 1.27190 1.00512 0.82680 0.95494 1.22267 0.94899 0.94370 1.16324 1.17375 0.82219 0.84334 0.79575 1.90715 1.31892 1.80081 1.44749 1.48111 1.27001 1.10235 1.46331 1.22147 0.86138 1.01127 0.98038 1.18612 0.93575 0.75826 0.95799 0.97127 1.21877 0.98207 1.02241 0.96760 1.21562 1.46536 0.96960 0.92814 0.92018 1.25701 0.94751 0.96150 1.01643 1.70019 1.46846 1.04551 1.34063 0.85470 0.78192 0.77778 0.79668 1.19139 1.21237 1.19670 0.89101 0.90761 0.88347 0.71310 0.89660 0.90471 0.90102 0.95890 0.91405 0.92979 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.20 10.49 71.23 0.75 -1.45 16 2 C 0.05 1.49 7.59 45.15 0.34 1.83 16 3 N -0.37 -10.59 12.01 -44.77 -0.54 -11.13 16 4 O 0.10 2.40 11.06 76.97 0.85 3.26 16 5 C 0.02 0.49 10.14 67.61 0.69 1.17 16 6 C -0.27 -8.62 5.64 -18.74 -0.11 -8.73 16 7 C 0.58 24.07 7.64 86.66 0.66 24.73 16 8 O -0.59 -30.25 15.79 -4.06 -0.06 -30.31 16 9 N -0.59 -23.91 2.75 -830.69 -2.29 -26.20 16 10 C 0.07 1.89 8.06 127.77 1.03 2.92 16 11 C 0.26 13.31 2.63 44.25 0.12 13.43 16 12 H 0.01 0.65 6.91 -2.39 -0.02 0.64 16 13 C -0.13 -6.11 8.97 71.98 0.65 -5.47 16 14 C -0.54 -28.55 7.95 25.60 0.20 -28.35 16 15 H 0.06 3.16 7.43 -2.91 -0.02 3.14 16 16 C 0.02 0.93 5.30 84.65 0.45 1.38 16 17 N -0.92 -51.76 11.32 21.45 0.24 -51.52 16 18 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 23 H 0.07 2.40 7.47 -2.39 -0.02 2.38 16 24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.27 2.98 6.65 -2.91 -0.02 2.96 16 26 H 0.09 1.72 7.51 -2.39 -0.02 1.71 16 27 H 0.08 2.38 7.11 -2.39 -0.02 2.36 16 28 H 0.08 1.85 5.97 -2.39 -0.01 1.84 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 31 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 32 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -70.01 273.73 6.14 -63.87 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.13 Total: 6.45 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.78 Total: 1.48 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -2.58 Total: -88.84 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: 0.79 Total: -27.06 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.01 6.14 -63.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.075 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds