Wall clock time and date at job start Sun Mar 29 2020 22:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21610 * 119.99789 * 0.02562 * 14 13 3 16 16 C 1.47396 * 120.00073 * 179.97438 * 14 13 3 17 17 C 1.37364 * 128.56473 * 359.68198 * 16 14 13 18 18 O 1.33487 * 106.33988 * 179.85514 * 17 16 14 19 19 N 1.20661 * 113.15789 * 0.44832 * 18 17 16 20 20 C 1.30007 * 112.30047 * 359.72089 * 19 18 17 21 21 C 1.50709 * 127.33404 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 23 23 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 25 25 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 26 26 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 27 27 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 28 28 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 29 29 H 1.07998 * 126.82677 * 359.97438 * 17 16 14 30 30 H 1.08994 * 109.46667 * 270.03714 * 21 20 19 31 31 H 1.08997 * 109.46846 * 30.03549 * 21 20 19 32 32 H 1.08997 * 109.46798 * 150.03915 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0051 0.8802 1.3811 10 1 6.5004 2.2801 1.3808 11 1 6.3979 0.2159 2.6498 12 1 6.5967 0.1454 0.2343 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6326 -0.4316 16 6 0.0453 3.3238 -2.6263 17 6 0.7773 3.4678 -3.7797 18 8 -0.0012 4.1302 -4.6383 19 7 -1.0805 4.4134 -4.1790 20 6 -1.2211 3.9956 -2.9559 21 6 -2.4251 4.1642 -2.0653 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8294 -0.0616 2.9495 28 1 2.2719 2.1232 -1.9978 29 1 1.7820 3.1137 -3.9573 30 1 -2.3342 5.0939 -1.5037 31 1 -3.3273 4.1955 -2.6761 32 1 -2.4845 3.3252 -1.3720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259788851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:32 Heat of formation + Delta-G solvation = -8.037202 kcal Electronic energy + Delta-G solvation = -17005.364831 eV Core-core repulsion = 14161.273437 eV Total energy + Delta-G solvation = -2844.091393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.90206 -40.57855 -36.98074 -35.40626 -34.44514 -33.41054 -32.25783 -29.75690 -28.89591 -25.90046 -24.65785 -22.26160 -22.10975 -21.08699 -19.57511 -18.72855 -18.22420 -17.23449 -17.13608 -16.28684 -16.17913 -15.46323 -14.66512 -14.57227 -14.28284 -14.12346 -13.84380 -13.49191 -13.37684 -13.14853 -12.90078 -12.63364 -12.33566 -12.17642 -12.03578 -11.57793 -11.05573 -10.93536 -10.85737 -10.71604 -10.50377 -9.65990 -8.14029 -6.31285 0.16893 0.76142 1.48315 1.49418 1.57040 2.03114 2.33813 2.39551 2.61283 3.07784 3.16215 3.38679 3.91975 4.16099 4.46979 4.51547 4.58984 4.61798 4.64874 4.77438 4.79142 5.08604 5.19849 5.28465 5.44800 5.55608 5.61758 5.81026 5.92659 6.18097 6.75744 6.92902 7.22007 7.34197 7.52101 8.91196 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.006421 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.337855 B = 4359.622663 C = 4854.434881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.694 5.694 14 C 0.580 3.420 15 O -0.574 6.574 16 C -0.278 4.278 17 C 0.027 3.973 18 O 0.099 5.901 19 N -0.379 5.379 20 C 0.053 3.947 21 C -0.074 4.074 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.273 0.727 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 4.066 -11.647 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.343 5.343 14 C 0.367 3.633 15 O -0.455 6.455 16 C -0.286 4.286 17 C -0.055 4.055 18 O 0.040 5.960 19 N -0.087 5.087 20 C -0.109 4.109 21 C -0.132 4.132 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.288 0.712 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.289 4.599 -11.662 13.250 hybrid contribution 1.403 -0.524 0.977 1.788 sum -2.885 4.075 -10.686 11.795 Atomic orbital electron populations 1.21689 0.97097 0.99144 1.00262 1.21803 0.93647 0.99135 1.01499 1.18413 0.93761 0.89129 0.80965 0.98044 1.21549 0.91256 1.39005 1.06813 0.90593 1.25742 1.03147 0.94404 0.95065 1.70039 1.37131 1.38284 1.09893 0.85449 0.79272 0.78402 0.77518 1.19714 1.21522 1.18791 1.46067 1.14611 1.55626 1.17973 1.17187 0.82297 0.78152 0.85695 1.90740 1.52417 1.61350 1.41008 1.22436 0.97139 1.11284 0.97747 1.27167 0.99206 0.92321 0.86799 1.84516 1.18376 1.54830 1.38237 1.73630 1.01350 1.21471 1.12298 1.25158 0.97479 0.96302 0.91942 1.20256 0.91667 1.04127 0.97125 0.93903 0.93684 0.95378 0.93806 0.90916 0.92624 0.75979 0.71197 0.89340 0.88851 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.64 2.24 44.25 0.10 13.74 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -27.44 8.73 25.60 0.22 -27.21 16 6 H 0.08 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -50.88 11.29 21.45 0.24 -50.64 16 9 Si 0.97 40.43 29.54 68.60 2.03 42.45 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 N -0.69 -26.49 5.02 -449.38 -2.25 -28.74 16 14 C 0.58 22.17 6.38 86.65 0.55 22.73 16 15 O -0.57 -26.25 12.83 -4.06 -0.05 -26.30 16 16 C -0.28 -8.33 6.47 -18.74 -0.12 -8.45 16 17 C 0.03 0.55 11.85 67.61 0.80 1.35 16 18 O 0.10 2.28 11.06 77.03 0.85 3.13 16 19 N -0.38 -10.52 12.01 -44.79 -0.54 -11.06 16 20 C 0.05 1.57 7.58 45.16 0.34 1.92 16 21 C -0.07 -1.96 10.15 71.24 0.72 -1.23 16 22 H 0.04 1.81 5.64 -2.39 -0.01 1.79 16 23 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 3.88 5.95 -2.39 -0.01 3.86 16 27 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.40 12.17 7.72 -92.70 -0.72 11.46 16 29 H 0.27 2.63 7.68 -2.91 -0.02 2.61 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.40 7.11 -2.39 -0.02 2.38 16 Total: -1.00 -65.53 273.87 4.55 -60.98 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.43 Total: 16.43 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 3.85 Total: -6.26 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -2.55 Total: -90.44 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.80 Total: -23.17 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.53 4.55 -60.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259788851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.942 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds