Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35446 * 126.77964 * 2 1 4 4 C 1.41381 * 103.98610 * 180.09134 * 3 2 1 5 5 C 1.50700 * 126.80196 * 179.88302 * 4 3 2 6 6 C 1.50702 * 109.46869 * 124.71031 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 8 6 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46927 * 59.99717 * 15 13 11 17 17 H 1.48496 * 109.47287 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47040 * 299.99940 * 15 13 11 19 19 N 1.30172 * 106.39552 * 359.62744 * 4 3 2 20 20 O 1.20922 * 111.60487 * 0.23805 * 19 4 3 21 21 H 1.09000 * 109.47284 * 180.29950 * 1 2 3 22 22 H 1.08998 * 109.47437 * 300.31089 * 1 2 3 23 23 H 1.09012 * 109.46756 * 60.30586 * 1 2 3 24 24 H 1.07997 * 128.00751 * 359.95087 * 3 2 1 25 25 H 1.09004 * 109.47210 * 4.71325 * 5 4 3 26 26 H 1.08994 * 109.47551 * 244.70977 * 5 4 3 27 27 H 1.08998 * 109.46921 * 89.99095 * 9 8 6 28 28 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 29 29 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 30 30 H 1.09001 * 109.47567 * 210.00057 * 10 8 6 31 31 H 1.09005 * 109.47076 * 330.00563 * 10 8 6 32 32 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0848 0.0000 4 6 3.6213 0.5371 -0.0022 5 6 4.9211 1.2998 -0.0056 6 6 5.7662 0.8573 1.1611 7 8 5.3539 0.0061 1.9203 8 7 6.9827 1.4031 1.3573 9 6 7.4811 2.4311 0.4401 10 6 7.8068 0.9687 2.4880 11 6 8.6730 -0.1888 2.0627 12 1 8.6158 -0.5631 1.0512 13 6 9.5387 -0.7700 2.9648 14 7 9.6081 -0.3146 4.1967 15 14 10.6130 -2.2044 2.4374 16 1 11.4925 -1.7790 1.3191 17 1 11.4482 -2.6449 3.5835 18 1 9.7525 -3.3290 1.9902 19 7 3.4763 -0.7565 0.0049 20 8 2.3094 -1.0737 0.0062 21 1 -0.3634 -1.0276 0.0054 22 1 -0.3634 0.5186 0.8871 23 1 -0.3633 0.5091 -0.8928 24 1 2.0345 2.1270 -0.0007 25 1 4.7163 2.3672 0.0783 26 1 5.4547 1.1043 -0.9356 27 1 7.1824 3.4154 0.8006 28 1 8.5685 2.3770 0.3900 29 1 7.0629 2.2655 -0.5528 30 1 8.4387 1.7942 2.8155 31 1 7.1615 0.6570 3.3093 32 1 10.2173 -0.7233 4.8312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = 24.035130 kcal Electronic energy + Delta-G solvation = -16594.460161 eV Core-core repulsion = 13751.759528 eV Total energy + Delta-G solvation = -2842.700633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.71601 -38.92936 -34.93351 -34.32036 -33.28220 -32.57098 -29.55113 -27.76710 -27.39650 -25.65049 -23.18153 -22.66757 -20.32625 -18.23803 -17.45769 -17.06163 -16.50496 -16.04981 -15.33973 -14.87487 -14.49065 -13.96785 -13.70236 -13.38805 -12.96277 -12.76650 -12.59905 -12.29360 -12.13769 -11.85308 -11.76041 -11.15746 -10.88284 -10.85921 -10.53014 -10.12993 -9.94064 -9.60988 -9.15675 -8.86811 -8.39948 -7.62413 -6.01100 -4.05680 1.65959 2.42313 3.27331 3.34738 3.39028 3.40035 3.46740 3.97970 4.36603 4.47040 4.57508 5.06782 5.13256 5.23276 5.26084 5.29908 5.34950 5.49289 5.55658 5.61814 5.78249 5.90675 5.96223 6.16790 6.21780 7.06704 7.46308 7.56098 7.95296 8.26576 8.41563 8.56428 8.93125 9.11443 9.59254 11.07053 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.005554 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.400142 B = 5040.644001 C = 5439.963666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.047 4.047 3 C -0.230 4.230 4 C 0.033 3.967 5 C -0.064 4.064 6 C 0.505 3.495 7 O -0.527 6.527 8 N -0.604 5.604 9 C 0.082 3.918 10 C 0.246 3.754 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 N -0.332 5.332 20 O 0.104 5.896 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.168 0.832 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 7.001 -10.665 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C -0.251 4.251 4 C -0.127 4.127 5 C -0.105 4.105 6 C 0.290 3.710 7 O -0.404 6.404 8 N -0.337 5.337 9 C -0.062 4.062 10 C 0.127 3.873 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 N -0.032 5.032 20 O 0.034 5.966 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.186 0.814 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.007 5.491 -10.052 18.094 hybrid contribution 0.467 0.134 -0.246 0.545 sum -13.540 5.625 -10.299 17.917 Atomic orbital electron populations 1.20272 0.84394 1.04431 1.03698 1.24436 0.96293 0.86588 1.03782 1.22300 0.91257 1.00774 1.10805 1.22895 0.96120 0.90062 1.03614 1.20109 0.90469 0.99744 1.00172 1.20006 0.82157 0.82647 0.86206 1.90714 1.71796 1.31029 1.46817 1.48133 1.16455 1.39017 1.30057 1.21661 1.01256 0.90644 0.92632 1.19280 0.89379 0.94992 0.83620 1.21405 1.21357 1.16034 0.97719 0.92536 1.24934 0.97188 0.97204 0.94753 1.69924 1.37870 1.41849 1.03865 0.86551 0.80129 0.82772 0.77951 1.20240 1.21145 1.20145 1.73936 0.95880 1.16382 1.17026 1.84884 1.11487 1.33171 1.67104 0.90074 0.89463 0.89507 0.81400 0.87460 0.87620 0.93647 0.90653 0.92490 0.94939 0.93911 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.00 0.38 -0.12 16 2 C -0.05 -0.59 7.49 -35.31 -0.26 -0.85 16 3 C -0.23 -2.97 11.05 -39.38 -0.44 -3.40 16 4 C 0.03 0.55 6.10 -82.10 -0.50 0.05 16 5 C -0.06 -1.01 4.85 -29.03 -0.14 -1.15 16 6 C 0.50 11.13 7.67 -10.98 -0.08 11.05 16 7 O -0.53 -14.36 15.17 5.55 0.08 -14.28 16 8 N -0.60 -13.23 2.86 -182.95 -0.52 -13.76 16 9 C 0.08 1.29 10.25 59.85 0.61 1.91 16 10 C 0.25 6.68 5.16 -5.20 -0.03 6.65 16 11 C -0.53 -15.49 9.39 -34.44 -0.32 -15.81 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.90 22.58 29.54 -169.99 -5.02 17.56 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 N -0.33 -6.46 11.46 33.42 0.38 -6.08 16 20 O 0.10 1.70 11.20 17.17 0.19 1.89 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 24 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.11 1.27 8.11 -51.93 -0.42 0.85 16 26 H 0.11 1.47 7.40 -51.93 -0.38 1.09 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -37.25 284.94 -4.76 -42.01 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -4.02 Total: -5.07 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.88 Total: 0.03 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.60 Total: -46.43 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.28 Total: -12.39 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -37.25 -4.76 -42.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.045 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds