Wall clock time and date at job start Sun Mar 29 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46750 * 2 1 4 4 C 1.35319 * 126.66343 * 90.33180 * 3 2 1 5 5 C 1.42270 * 103.92341 * 180.10597 * 4 3 2 6 6 C 1.48326 * 126.94221 * 179.85471 * 5 4 3 7 7 O 1.21498 * 119.99712 * 353.63094 * 6 5 4 8 8 N 1.34776 * 120.00431 * 173.35273 * 6 5 4 9 9 C 1.46495 * 119.99730 * 3.73236 * 8 6 5 10 10 C 1.46503 * 120.00424 * 183.72840 * 8 6 5 11 11 C 1.50697 * 109.46726 * 89.99849 * 10 8 6 12 12 H 1.07997 * 120.00515 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99848 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00256 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00090 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47640 * 90.00244 * 15 13 11 17 17 H 1.48504 * 109.47317 * 210.00306 * 15 13 11 18 18 H 1.48498 * 109.47211 * 329.99943 * 15 13 11 19 19 N 1.30987 * 106.12246 * 359.59491 * 5 4 3 20 20 O 1.20913 * 111.43715 * 0.25798 * 19 5 4 21 21 H 1.09003 * 109.47193 * 299.99409 * 1 2 3 22 22 H 1.09005 * 109.47428 * 60.00130 * 1 2 3 23 23 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47193 * 240.00591 * 2 1 3 25 25 H 1.08991 * 109.47209 * 120.00389 * 2 1 3 26 26 H 1.08004 * 128.03941 * 359.96339 * 4 3 2 27 27 H 1.09003 * 109.47755 * 84.25219 * 9 8 6 28 28 H 1.08999 * 109.47450 * 204.25466 * 9 8 6 29 29 H 1.08997 * 109.47148 * 324.25537 * 9 8 6 30 30 H 1.08994 * 109.47294 * 210.00405 * 10 8 6 31 31 H 1.09003 * 109.46922 * 330.00601 * 10 8 6 32 32 H 0.96998 * 120.00655 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3075 2.1806 1.0855 5 6 2.7394 3.4196 0.5355 6 6 3.1663 4.6267 1.2843 7 8 3.0602 4.6602 2.4942 8 7 3.6772 5.6842 0.6232 9 6 3.7352 5.6745 -0.8406 10 6 4.1744 6.8435 1.3683 11 6 5.6364 6.6515 1.6789 12 1 6.1446 5.7558 1.3536 13 6 6.3256 7.6198 2.3777 14 7 5.7071 8.7108 2.7735 15 14 8.1381 7.3822 2.7622 16 1 8.9565 7.9479 1.6597 17 1 8.4701 8.0772 4.0319 18 1 8.4288 5.9326 2.9009 19 7 2.6892 3.2772 -0.7656 20 8 2.2994 2.1752 -1.0749 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.2177 1.9101 2.1272 27 1 2.7775 6.0027 -1.2445 28 1 4.5220 6.3494 -1.1776 29 1 3.9494 4.6642 -1.1890 30 1 4.0457 7.7439 0.7677 31 1 3.6155 6.9444 2.2986 32 1 6.1920 9.3923 3.2648 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:13 Heat of formation + Delta-G solvation = 28.549919 kcal Electronic energy + Delta-G solvation = -16662.056174 eV Core-core repulsion = 13819.551318 eV Total energy + Delta-G solvation = -2842.504857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.89137 -38.85919 -35.15450 -34.79222 -33.66932 -32.50060 -30.19697 -27.92342 -26.08562 -24.52087 -24.18104 -22.64326 -21.53374 -18.58814 -17.66133 -17.13297 -16.51521 -16.25799 -15.30574 -14.76559 -14.41085 -14.30690 -14.16914 -13.44896 -12.92099 -12.72875 -12.45458 -12.29957 -12.10932 -11.91356 -11.45067 -11.21852 -11.03291 -10.76688 -10.55420 -10.20517 -10.15618 -9.67017 -9.36063 -9.33254 -8.45782 -7.71946 -6.06651 -4.12034 1.36571 1.90161 3.02500 3.29859 3.35968 3.40389 3.63710 3.83422 4.27836 4.41807 4.55976 4.81329 4.91422 5.10849 5.17492 5.27207 5.40466 5.50907 5.54734 5.73700 5.87262 5.92115 6.02532 6.06196 6.41000 6.99846 7.37101 7.46149 7.88848 8.16885 8.18481 8.31599 8.79801 8.96544 9.52964 11.01529 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044828 B = 0.005310 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.459332 B = 5271.987157 C = 5363.634577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.042 4.042 4 C -0.182 4.182 5 C -0.008 4.008 6 C 0.580 3.420 7 O -0.527 6.527 8 N -0.582 5.582 9 C 0.077 3.923 10 C 0.244 3.756 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.332 5.332 20 O 0.107 5.893 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.177 0.823 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 -15.684 -7.786 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.204 4.204 5 C -0.168 4.168 6 C 0.363 3.637 7 O -0.403 6.403 8 N -0.313 5.313 9 C -0.067 4.067 10 C 0.125 3.875 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.728 3.272 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.037 5.037 20 O 0.036 5.964 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.195 0.805 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.305 -14.591 -8.036 18.613 hybrid contribution 0.989 -0.267 0.913 1.372 sum -7.315 -14.858 -7.124 18.028 Atomic orbital electron populations 1.21808 0.93583 1.02558 1.02996 1.20092 0.96561 0.86401 1.04708 1.24419 1.03177 0.97095 0.85841 1.22434 1.04766 0.91904 1.01333 1.23954 1.04547 0.98449 0.89823 1.16938 0.79217 0.81174 0.86325 1.90758 1.56067 1.80745 1.12726 1.48095 1.57871 1.18192 1.07120 1.21950 1.01215 1.03149 0.80357 1.19432 0.94607 0.81053 0.92406 1.21415 0.94493 1.04766 1.36196 0.92379 1.24932 0.98794 0.94977 0.95299 1.69930 1.36569 1.08429 1.38316 0.86457 0.84582 0.78354 0.77819 1.20553 1.20980 1.19868 1.74361 1.14706 0.98728 1.15868 1.84772 1.60235 1.17822 1.33617 0.91949 0.92043 0.91366 0.89349 0.88488 0.80545 0.93543 0.90645 0.90523 0.94451 0.93428 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.04 -0.28 6.50 -27.88 -0.18 -0.46 16 3 C -0.04 -0.50 6.73 -35.35 -0.24 -0.74 16 4 C -0.18 -2.70 10.93 -39.07 -0.43 -3.13 16 5 C -0.01 -0.16 6.87 -82.53 -0.57 -0.72 16 6 C 0.58 13.46 7.70 -12.11 -0.09 13.36 16 7 O -0.53 -13.92 16.52 5.37 0.09 -13.83 16 8 N -0.58 -13.63 2.86 -183.90 -0.53 -14.15 16 9 C 0.08 1.46 9.67 59.84 0.58 2.04 16 10 C 0.24 6.64 5.16 -5.19 -0.03 6.61 16 11 C -0.53 -15.46 9.39 -34.44 -0.32 -15.78 16 12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 19 N -0.33 -5.57 8.70 33.29 0.29 -5.28 16 20 O 0.11 1.48 11.18 17.26 0.19 1.68 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 29 H 0.08 1.38 5.35 -51.93 -0.28 1.11 16 30 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.05 1.43 7.38 -51.93 -0.38 1.05 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -33.54 283.54 -4.97 -38.51 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -4.00 Total: -4.51 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.01 Total: 2.29 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.50 Total: -45.53 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.28 Total: -12.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.54 -4.97 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.063 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds