Wall clock time and date at job start Sun Mar 29 2020 22:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46750 * 2 1 4 4 C 1.35319 * 126.66343 * 90.33180 * 3 2 1 5 5 C 1.42270 * 103.92341 * 180.10597 * 4 3 2 6 6 C 1.48326 * 126.94221 * 179.85471 * 5 4 3 7 7 O 1.21498 * 119.99712 * 353.63094 * 6 5 4 8 8 N 1.34776 * 120.00431 * 173.35273 * 6 5 4 9 9 C 1.46495 * 119.99730 * 3.73236 * 8 6 5 10 10 C 1.46503 * 120.00424 * 183.72840 * 8 6 5 11 11 C 1.50697 * 109.46726 * 89.99849 * 10 8 6 12 12 H 1.07997 * 120.00515 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99848 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00256 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00090 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47640 * 90.00244 * 15 13 11 17 17 H 1.48504 * 109.47317 * 210.00306 * 15 13 11 18 18 H 1.48498 * 109.47211 * 329.99943 * 15 13 11 19 19 N 1.30987 * 106.12246 * 359.59491 * 5 4 3 20 20 O 1.20913 * 111.43715 * 0.25798 * 19 5 4 21 21 H 1.09003 * 109.47193 * 299.99409 * 1 2 3 22 22 H 1.09005 * 109.47428 * 60.00130 * 1 2 3 23 23 H 1.09001 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47193 * 240.00591 * 2 1 3 25 25 H 1.08991 * 109.47209 * 120.00389 * 2 1 3 26 26 H 1.08004 * 128.03941 * 359.96339 * 4 3 2 27 27 H 1.09003 * 109.47755 * 84.25219 * 9 8 6 28 28 H 1.08999 * 109.47450 * 204.25466 * 9 8 6 29 29 H 1.08997 * 109.47148 * 324.25537 * 9 8 6 30 30 H 1.08994 * 109.47294 * 210.00405 * 10 8 6 31 31 H 1.09003 * 109.46922 * 330.00601 * 10 8 6 32 32 H 0.96998 * 120.00655 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3075 2.1806 1.0855 5 6 2.7394 3.4196 0.5355 6 6 3.1663 4.6267 1.2843 7 8 3.0602 4.6602 2.4942 8 7 3.6772 5.6842 0.6232 9 6 3.7352 5.6745 -0.8406 10 6 4.1744 6.8435 1.3683 11 6 5.6364 6.6515 1.6789 12 1 6.1446 5.7558 1.3536 13 6 6.3256 7.6198 2.3777 14 7 5.7071 8.7108 2.7735 15 14 8.1381 7.3822 2.7622 16 1 8.9565 7.9479 1.6597 17 1 8.4701 8.0772 4.0319 18 1 8.4288 5.9326 2.9009 19 7 2.6892 3.2772 -0.7656 20 8 2.2994 2.1752 -1.0749 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 2.2177 1.9101 2.1272 27 1 2.7775 6.0027 -1.2445 28 1 4.5220 6.3494 -1.1776 29 1 3.9494 4.6642 -1.1890 30 1 4.0457 7.7439 0.7677 31 1 3.6155 6.9444 2.2986 32 1 6.1920 9.3923 3.2648 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259937341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:13 Heat of formation + Delta-G solvation = 6.356022 kcal Electronic energy + Delta-G solvation = -16663.018574 eV Core-core repulsion = 13819.551318 eV Total energy + Delta-G solvation = -2843.467256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.15402 -40.69736 -36.88673 -35.80519 -35.19276 -34.45745 -31.18970 -29.96621 -27.75898 -26.30649 -24.97901 -24.25230 -22.94495 -20.11252 -18.96453 -18.71963 -18.42168 -17.77922 -17.19873 -16.38094 -16.09178 -15.44107 -15.30225 -14.60922 -14.40070 -14.35834 -13.96061 -13.76852 -13.47833 -13.27345 -13.04176 -12.64944 -12.56065 -12.31809 -12.16049 -11.84658 -11.75897 -11.49333 -11.22864 -10.69574 -10.43196 -9.65504 -8.28840 -6.44865 0.08052 0.68152 1.34857 1.37808 1.48511 1.85005 2.08135 2.15467 2.36097 2.87230 3.01376 3.46428 3.90938 4.00048 4.19739 4.34290 4.39164 4.48315 4.54584 4.72173 4.82594 4.94053 5.00921 5.09541 5.09916 5.18409 5.41792 5.43798 5.68864 5.94926 6.41631 6.61685 6.93986 7.11028 7.27214 8.79156 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044828 B = 0.005310 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.459332 B = 5271.987157 C = 5363.634577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.009 4.009 4 C -0.198 4.198 5 C -0.042 4.042 6 C 0.573 3.427 7 O -0.574 6.574 8 N -0.592 5.592 9 C 0.080 3.920 10 C 0.258 3.742 11 C -0.552 4.552 12 H 0.051 0.949 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.973 3.027 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.274 1.274 19 N -0.338 5.338 20 O 0.128 5.872 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.186 0.814 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.007 0.993 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -18.096 -9.057 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.073 4.073 4 C -0.221 4.221 5 C -0.199 4.199 6 C 0.360 3.640 7 O -0.453 6.453 8 N -0.322 5.322 9 C -0.063 4.063 10 C 0.137 3.863 11 C -0.590 4.590 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.796 3.204 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.198 1.198 19 N -0.039 5.039 20 O 0.051 5.949 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.203 0.797 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.948 -16.978 -9.345 20.947 hybrid contribution 0.766 0.385 1.244 1.511 sum -7.182 -16.593 -8.102 19.813 Atomic orbital electron populations 1.21827 0.92773 1.04016 1.02295 1.20448 0.96988 0.83090 1.07043 1.25194 1.00128 0.98128 0.83812 1.22614 1.05756 0.90934 1.02777 1.23427 1.07693 0.97988 0.90820 1.17494 0.78217 0.82125 0.86185 1.90706 1.57893 1.81875 1.14827 1.48110 1.57852 1.17472 1.08777 1.22102 1.02378 1.04115 0.77661 1.18960 0.93661 0.82531 0.91126 1.21624 0.95372 1.04857 1.37145 0.93061 1.25875 1.03859 0.94423 0.94652 1.70041 1.38638 1.09182 1.38555 0.85339 0.78480 0.78257 0.78275 1.18688 1.20099 1.19841 1.74302 1.14775 1.00048 1.14824 1.84743 1.58914 1.17072 1.34128 0.92964 0.92519 0.88867 0.86786 0.86368 0.79657 0.91610 0.90522 0.89239 0.95057 0.97447 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.04 -0.38 6.50 29.85 0.19 -0.19 16 3 C -0.01 -0.19 6.73 25.01 0.17 -0.02 16 4 C -0.20 -5.66 10.93 22.60 0.25 -5.42 16 5 C -0.04 -1.59 6.87 42.96 0.30 -1.29 16 6 C 0.57 27.66 7.70 86.93 0.67 28.33 16 7 O -0.57 -31.97 16.52 -3.71 -0.06 -32.03 16 8 N -0.59 -28.71 2.86 -854.04 -2.44 -31.15 16 9 C 0.08 3.03 9.67 127.77 1.24 4.26 16 10 C 0.26 14.73 5.16 85.63 0.44 15.17 16 11 C -0.55 -33.09 9.39 25.60 0.24 -32.85 16 12 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 13 C 0.01 0.68 5.46 84.65 0.46 1.14 16 14 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 15 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 N -0.34 -10.94 8.70 -49.51 -0.43 -11.37 16 20 O 0.13 3.22 11.18 71.93 0.80 4.02 16 21 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 23 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.19 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.08 2.86 8.03 -2.39 -0.02 2.84 16 29 H 0.09 3.18 5.35 -2.39 -0.01 3.16 16 30 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.41 283.54 5.97 -69.44 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 1.12 Total: 1.35 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.67 Total: 8.46 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -2.59 Total: -98.84 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: 0.74 Total: -28.00 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.41 5.97 -69.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.800 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds