Wall clock time and date at job start Sun Mar 29 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 C 1.50698 * 109.47387 * 175.00027 * 3 2 1 6 6 H 1.07999 * 120.00181 * 119.99635 * 5 3 2 7 7 C 1.37879 * 120.00000 * 300.00183 * 5 3 2 8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00239 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47099 * 89.99578 * 9 7 5 11 11 H 1.48501 * 109.47068 * 209.99812 * 9 7 5 12 12 H 1.48496 * 109.46733 * 329.99631 * 9 7 5 13 13 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 14 14 C 1.34773 * 120.00431 * 85.00044 * 13 3 2 15 15 O 1.21603 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47454 * 119.99984 * 179.72682 * 14 13 3 17 17 N 1.31286 * 125.70941 * 359.96204 * 16 14 13 18 18 C 1.33451 * 108.70565 * 179.87222 * 17 16 14 19 19 C 1.35236 * 107.84003 * 0.39441 * 18 17 16 20 20 C 1.50700 * 126.39165 * 179.78147 * 19 18 17 21 21 O 1.34304 * 107.21307 * 359.76090 * 19 18 17 22 22 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 24 24 H 1.08991 * 109.47261 * 59.99576 * 1 2 3 25 25 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 26 26 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 27 27 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99456 * 264.99607 * 13 3 2 29 29 H 1.08010 * 126.07918 * 180.13219 * 18 17 16 30 30 H 1.09008 * 109.47036 * 179.97438 * 20 19 18 31 31 H 1.08997 * 109.47459 * 299.99782 * 20 19 18 32 32 H 1.09002 * 109.47002 * 60.00442 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0051 0.8800 1.3812 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8394 0.0270 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0473 3.3289 -2.6248 17 7 0.7959 3.4344 -3.6981 18 6 0.1114 4.0949 -4.6341 19 6 -1.0964 4.4141 -4.1163 20 6 -2.1982 5.1677 -4.8157 21 8 -1.1308 3.9338 -2.8626 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0611 2.9499 28 1 2.2719 2.1231 -1.9977 29 1 0.4615 4.3357 -5.6271 30 1 -3.0505 5.2716 -4.1440 31 1 -1.8379 6.1559 -5.1015 32 1 -2.5035 4.6203 -5.7074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:41 Heat of formation + Delta-G solvation = -19.290863 kcal Electronic energy + Delta-G solvation = -16823.938876 eV Core-core repulsion = 13979.359487 eV Total energy + Delta-G solvation = -2844.579389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.32921 -38.97965 -35.27453 -34.78303 -32.71686 -32.29201 -30.96747 -27.91713 -26.60999 -23.71474 -22.91437 -21.87311 -20.58193 -19.47503 -18.17781 -16.85193 -16.38243 -15.80139 -15.29509 -14.64961 -14.50268 -14.13969 -13.60161 -13.33713 -13.21840 -12.71920 -12.54627 -12.15274 -11.60224 -11.36634 -11.28896 -11.00187 -10.86490 -10.61896 -10.37459 -10.24515 -9.73208 -9.52803 -9.11164 -8.76089 -8.53847 -7.97871 -6.15064 -4.24594 1.07439 2.38638 2.39128 3.25606 3.32264 3.34966 3.66991 3.80119 4.31682 4.57290 4.72996 4.93010 5.12514 5.15224 5.17204 5.37875 5.77695 5.97089 6.18095 6.35649 6.41734 6.60096 6.99716 7.11069 7.19409 7.31555 7.47141 7.61955 7.71948 7.83960 8.10837 8.49108 8.66862 8.90855 9.41990 10.90493 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.005907 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.573957 B = 4738.923652 C = 5215.447748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.595 3.405 15 O -0.524 6.524 16 C 0.157 3.843 17 N -0.444 5.444 18 C -0.043 4.043 19 C -0.042 4.042 20 C -0.068 4.068 21 O -0.168 6.168 22 H 0.027 0.973 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.104 0.896 27 H 0.266 0.734 28 H 0.402 0.598 29 H 0.188 0.812 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 6.137 -12.470 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.319 5.319 14 C 0.375 3.625 15 O -0.400 6.400 16 C -0.050 4.050 17 N -0.177 5.177 18 C -0.185 4.185 19 C -0.098 4.098 20 C -0.125 4.125 21 O -0.052 6.052 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.237 0.763 29 H 0.205 0.795 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.888 5.729 -11.508 14.584 hybrid contribution 0.590 0.320 -0.405 0.783 sum -6.299 6.049 -11.913 14.771 Atomic orbital electron populations 1.21867 0.98315 0.98431 1.01161 1.21973 0.92640 0.99394 1.02782 1.19029 0.94778 0.89351 0.79863 0.92719 1.21196 0.90219 1.39375 1.06575 0.91712 1.24871 0.98813 0.94616 0.95239 1.69889 1.35260 1.37454 1.09323 0.86399 0.84523 0.77646 0.78279 1.20525 1.21043 1.19733 1.46326 1.12722 1.53434 1.19420 1.16144 0.84174 0.79810 0.82389 1.90854 1.51417 1.59856 1.37825 1.26230 0.80723 1.00245 0.97795 1.70408 1.31633 1.15904 0.99707 1.23159 0.91625 1.02710 1.01055 1.23952 0.99990 1.02339 0.83510 1.20307 0.94234 0.98784 0.99164 1.84475 1.36823 1.54255 1.29601 0.95435 0.92929 0.94573 0.94589 0.87803 0.92447 0.76347 0.79468 0.90172 0.89116 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.81 2.24 -69.09 -0.15 6.65 16 4 H 0.06 1.56 7.58 -51.92 -0.39 1.17 16 5 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.33 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.67 -14.68 5.02 -56.00 -0.28 -14.96 16 14 C 0.59 12.91 6.38 -12.51 -0.08 12.83 16 15 O -0.52 -12.72 14.24 -0.18 0.00 -12.72 16 16 C 0.16 2.96 8.09 -14.03 -0.11 2.84 16 17 N -0.44 -7.55 10.91 -11.79 -0.13 -7.68 16 18 C -0.04 -0.56 11.80 -17.92 -0.21 -0.77 16 19 C -0.04 -0.54 7.40 -35.38 -0.26 -0.80 16 20 C -0.07 -0.49 10.44 36.01 0.38 -0.12 16 21 O -0.17 -2.90 10.79 -0.43 0.00 -2.90 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 24 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.40 8.13 8.21 -40.82 -0.34 7.80 16 29 H 0.19 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 277.48 15.07 4.18 4.18 Total: -1.00 -30.33 277.48 -5.12 -35.45 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.82 Total: 4.99 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.67 Total: 1.87 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.22 Total: -46.34 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.01 Total: -15.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.33 -5.12 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.157 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds