Wall clock time and date at job start Sun Mar 29 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 C 1.50698 * 109.47387 * 175.00027 * 3 2 1 6 6 H 1.07999 * 120.00181 * 119.99635 * 5 3 2 7 7 C 1.37879 * 120.00000 * 300.00183 * 5 3 2 8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00239 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47099 * 89.99578 * 9 7 5 11 11 H 1.48501 * 109.47068 * 209.99812 * 9 7 5 12 12 H 1.48496 * 109.46733 * 329.99631 * 9 7 5 13 13 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 14 14 C 1.34773 * 120.00431 * 85.00044 * 13 3 2 15 15 O 1.21603 * 119.99887 * 359.97438 * 14 13 3 16 16 C 1.47454 * 119.99984 * 179.72682 * 14 13 3 17 17 N 1.31286 * 125.70941 * 359.96204 * 16 14 13 18 18 C 1.33451 * 108.70565 * 179.87222 * 17 16 14 19 19 C 1.35236 * 107.84003 * 0.39441 * 18 17 16 20 20 C 1.50700 * 126.39165 * 179.78147 * 19 18 17 21 21 O 1.34304 * 107.21307 * 359.76090 * 19 18 17 22 22 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 24 24 H 1.08991 * 109.47261 * 59.99576 * 1 2 3 25 25 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 26 26 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 27 27 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99456 * 264.99607 * 13 3 2 29 29 H 1.08010 * 126.07918 * 180.13219 * 18 17 16 30 30 H 1.09008 * 109.47036 * 179.97438 * 20 19 18 31 31 H 1.08997 * 109.47459 * 299.99782 * 20 19 18 32 32 H 1.09002 * 109.47002 * 60.00442 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0051 0.8800 1.3812 10 1 6.4428 2.1129 2.0836 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8394 0.0270 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0473 3.3289 -2.6248 17 7 0.7959 3.4344 -3.6981 18 6 0.1114 4.0949 -4.6341 19 6 -1.0964 4.4141 -4.1163 20 6 -2.1982 5.1677 -4.8157 21 8 -1.1308 3.9338 -2.8626 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0611 2.9499 28 1 2.2719 2.1231 -1.9977 29 1 0.4615 4.3357 -5.6271 30 1 -3.0505 5.2716 -4.1440 31 1 -1.8379 6.1559 -5.1015 32 1 -2.5035 4.6203 -5.7074 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:41 Heat of formation + Delta-G solvation = -42.433185 kcal Electronic energy + Delta-G solvation = -16824.942403 eV Core-core repulsion = 13979.359487 eV Total energy + Delta-G solvation = -2845.582915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.54417 -40.73719 -37.11474 -36.11502 -34.38860 -33.56990 -32.73909 -29.48452 -28.11092 -25.30417 -24.53219 -23.11953 -22.11705 -21.34807 -19.82069 -18.13305 -18.05339 -17.52224 -16.98319 -16.25285 -16.14328 -15.44460 -15.06693 -14.63218 -14.33656 -14.08654 -13.77236 -13.54303 -13.31799 -13.20263 -12.93186 -12.69771 -12.64327 -12.22544 -12.10755 -11.82442 -11.64729 -11.34032 -11.11517 -10.56102 -9.99592 -9.70260 -8.17690 -6.35199 -0.22016 1.09415 1.22038 1.47268 1.47672 1.58745 2.09861 2.39092 2.56211 3.11761 3.17161 3.70042 3.92140 4.30840 4.41046 4.46203 4.52270 4.69508 4.70990 4.95855 5.01313 5.04754 5.18864 5.22569 5.35279 5.37454 5.56308 5.71443 5.80225 6.09890 6.33625 6.66965 6.75629 7.12387 7.37037 8.88091 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.005907 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.573957 B = 4738.923652 C = 5215.447748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.071 0.929 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.973 3.027 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.262 1.262 13 N -0.668 5.668 14 C 0.598 3.402 15 O -0.562 6.562 16 C 0.108 3.892 17 N -0.442 5.442 18 C -0.052 4.052 19 C -0.019 4.019 20 C -0.069 4.069 21 O -0.188 6.188 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.267 0.733 28 H 0.410 0.590 29 H 0.233 0.767 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 7.042 -15.203 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.797 3.203 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.186 1.186 13 N -0.318 5.318 14 C 0.381 3.619 15 O -0.441 6.441 16 C -0.095 4.095 17 N -0.176 5.176 18 C -0.196 4.196 19 C -0.074 4.074 20 C -0.125 4.125 21 O -0.071 6.071 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.246 0.754 29 H 0.249 0.751 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.770 6.638 -14.256 17.122 hybrid contribution 0.425 0.168 0.280 0.536 sum -6.346 6.807 -13.977 16.791 Atomic orbital electron populations 1.21714 0.97003 0.99648 1.00114 1.21823 0.93737 0.98587 1.01938 1.18670 0.94352 0.89494 0.79931 0.97182 1.21493 0.90814 1.39606 1.07068 0.91091 1.25727 1.03436 0.94071 0.94770 1.70025 1.37162 1.37985 1.09791 0.85332 0.78827 0.77535 0.78574 1.20364 1.20674 1.18640 1.46033 1.13387 1.53766 1.18614 1.16331 0.83371 0.79045 0.83196 1.90815 1.52321 1.61253 1.39675 1.25192 0.82454 1.04313 0.97582 1.70355 1.31963 1.15476 0.99812 1.23936 0.91467 1.02150 1.02024 1.25190 1.01169 0.99488 0.81572 1.20707 0.92475 0.99808 0.99496 1.84462 1.36307 1.54436 1.31916 0.92910 0.94935 0.94639 0.93760 0.90037 0.92341 0.75375 0.75098 0.90015 0.86110 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.56 2.24 44.24 0.10 14.66 16 4 H 0.01 0.63 7.58 -2.38 -0.02 0.61 16 5 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 1.11 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.57 11.29 21.45 0.24 -51.33 16 9 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 13 N -0.67 -30.31 5.02 -449.35 -2.25 -32.56 16 14 C 0.60 26.96 6.38 86.67 0.55 27.51 16 15 O -0.56 -28.78 14.24 1.18 0.02 -28.76 16 16 C 0.11 4.11 8.09 87.21 0.71 4.82 16 17 N -0.44 -14.47 10.91 -305.19 -3.33 -17.80 16 18 C -0.05 -1.20 11.80 83.75 0.99 -0.21 16 19 C -0.02 -0.42 7.40 24.99 0.18 -0.24 16 20 C -0.07 -0.68 10.44 71.24 0.74 0.07 16 21 O -0.19 -6.35 10.79 0.29 0.00 -6.35 16 22 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 24 H 0.03 1.61 5.64 -2.39 -0.01 1.59 16 25 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 4.46 5.95 -2.38 -0.01 4.44 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.41 16.93 8.21 -92.71 -0.76 16.17 16 29 H 0.23 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -68.83 277.48 1.81 -67.02 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.38 Total: 18.01 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.73 Total: 7.65 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -5.34 Total: -101.68 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: 0.02 Total: -35.11 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.83 1.81 -67.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.583 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds