Wall clock time and date at job start Sun Mar 29 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47228 * 2 1 4 4 C 1.35311 * 126.66450 * 90.28743 * 3 2 1 5 5 C 1.42271 * 103.92043 * 180.09264 * 4 3 2 6 6 C 1.48334 * 126.93784 * 179.91390 * 5 4 3 7 7 O 1.21503 * 120.00080 * 359.70105 * 6 5 4 8 8 N 1.34777 * 120.00028 * 179.70657 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27546 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99545 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47199 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47080 * 119.99932 * 15 13 11 18 18 H 1.48498 * 109.47127 * 239.99826 * 15 13 11 19 19 N 1.30978 * 106.12479 * 359.64516 * 5 4 3 20 20 O 1.20908 * 111.43902 * 0.22643 * 19 5 4 21 21 H 1.08996 * 109.47573 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47004 * 300.00117 * 1 2 3 23 23 H 1.09005 * 109.47161 * 59.99757 * 1 2 3 24 24 H 1.09005 * 109.46855 * 240.00172 * 2 1 3 25 25 H 1.08992 * 109.46878 * 120.00345 * 2 1 3 26 26 H 1.07999 * 128.03814 * 359.96473 * 4 3 2 27 27 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 29 29 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 30 30 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 31 31 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 32 32 H 0.97004 * 119.99855 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3068 2.1808 1.0854 5 6 2.7395 3.4195 0.5354 6 6 3.1673 4.6264 1.2842 7 8 3.1652 4.6200 2.4992 8 7 3.5583 5.7301 0.6168 9 6 3.9866 6.9200 1.3563 10 6 4.3820 8.0195 0.3686 11 6 4.8220 9.2437 1.1293 12 1 4.8194 9.2383 2.2093 13 6 5.2278 10.3708 0.4466 14 7 5.2314 10.3772 -0.8686 15 14 5.7725 11.8885 1.3895 16 1 5.6772 11.6258 2.8480 17 1 7.1779 12.2128 1.0362 18 1 4.8959 13.0332 1.0340 19 7 2.6894 3.2771 -0.7657 20 8 2.2995 2.1752 -1.0750 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.2163 1.9106 2.1271 27 1 3.5603 5.7351 -0.3532 28 1 3.1676 7.2723 1.9835 29 1 4.8425 6.6698 1.9831 30 1 5.2010 7.6671 -0.2585 31 1 3.5262 8.2698 -0.2583 32 1 5.5173 11.1700 -1.3489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260287213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:16 Heat of formation + Delta-G solvation = 3.983012 kcal Electronic energy + Delta-G solvation = -15929.598024 eV Core-core repulsion = 13086.027867 eV Total energy + Delta-G solvation = -2843.570158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.13992 -39.19890 -35.24926 -34.92019 -33.89265 -32.82600 -30.43566 -29.62851 -25.66831 -24.46186 -23.77415 -22.43054 -20.98460 -19.77388 -17.90669 -17.56056 -16.77697 -16.30838 -15.23363 -14.94719 -14.85681 -14.64385 -14.40771 -13.64284 -13.36195 -13.15518 -12.94362 -12.33615 -12.14633 -11.77949 -11.30664 -11.23256 -11.07586 -10.64813 -10.51188 -10.34658 -10.12263 -9.59833 -9.59093 -9.26520 -8.63674 -8.40313 -6.09801 -4.13154 1.11769 1.62084 2.81000 3.28326 3.29779 3.36352 3.38218 3.41868 4.02094 4.35766 4.44526 4.66582 4.78545 4.91972 5.00212 5.23902 5.27171 5.39479 5.43452 5.59385 5.74735 5.82158 6.26218 6.28077 6.65958 6.76292 7.48954 7.59086 7.77094 7.88180 8.02860 8.24196 8.43148 8.92797 9.51744 11.01859 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.068306 B = 0.003817 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.821178 B = 7334.020214 C = 7629.439007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.039 4.039 4 C -0.182 4.182 5 C -0.019 4.019 6 C 0.587 3.413 7 O -0.533 6.533 8 N -0.703 5.703 9 C 0.120 3.880 10 C 0.011 3.989 11 C -0.522 4.522 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.331 5.331 20 O 0.121 5.879 21 H 0.069 0.931 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.179 0.821 27 H 0.404 0.596 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -20.665 -0.053 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.102 4.102 4 C -0.204 4.204 5 C -0.179 4.179 6 C 0.370 3.630 7 O -0.409 6.409 8 N -0.352 5.352 9 C -0.001 4.001 10 C -0.026 4.026 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.032 5.032 20 O 0.045 5.955 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.197 0.803 27 H 0.239 0.761 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.582 -19.637 -0.309 21.052 hybrid contribution 0.244 0.629 0.646 0.935 sum -7.338 -19.007 0.338 20.378 Atomic orbital electron populations 1.21815 0.93418 1.02745 1.03062 1.20126 0.96690 0.86144 1.04895 1.24505 1.02803 0.97223 0.85650 1.22428 1.04842 0.91693 1.01429 1.23730 1.05854 0.98237 0.90030 1.16957 0.78324 0.81298 0.86463 1.90771 1.54887 1.82792 1.12498 1.46275 1.64324 1.13479 1.11163 1.21868 0.98893 0.83317 0.96064 1.19349 0.97274 0.91742 0.94257 1.21065 1.44450 0.97262 0.93279 0.92101 1.25010 0.95470 0.98949 0.94915 1.69973 1.47547 1.29362 1.06288 0.86436 0.78265 0.82580 0.80167 1.19559 1.20916 1.20910 1.74207 1.14077 0.99138 1.15783 1.84779 1.59957 1.17305 1.33436 0.91208 0.91942 0.91943 0.89154 0.88343 0.80345 0.76097 0.92030 0.92037 0.95777 0.95778 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.42 16 2 C -0.04 -0.23 6.50 -27.88 -0.18 -0.41 16 3 C -0.04 -0.39 6.73 -35.35 -0.24 -0.63 16 4 C -0.18 -2.23 10.92 -39.08 -0.43 -2.65 16 5 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 6 C 0.59 11.09 7.85 -12.11 -0.10 11.00 16 7 O -0.53 -11.35 16.95 5.36 0.09 -11.26 16 8 N -0.70 -13.61 5.55 -61.09 -0.34 -13.95 16 9 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 10 C 0.01 0.29 5.09 -27.89 -0.14 0.14 16 11 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 12 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.33 -5.01 11.84 33.29 0.39 -4.62 16 20 O 0.12 1.50 11.18 17.25 0.19 1.69 16 21 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.40 7.35 8.23 -40.82 -0.34 7.01 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -32.17 289.63 -5.43 -37.59 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.10 Total: 0.02 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.74 Total: -4.64 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.79 Total: -44.30 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.28 Total: -9.57 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.17 -5.43 -37.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.577 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds