Wall clock time and date at job start Sun Mar 29 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47228 * 2 1 4 4 C 1.35311 * 126.66450 * 90.28743 * 3 2 1 5 5 C 1.42271 * 103.92043 * 180.09264 * 4 3 2 6 6 C 1.48334 * 126.93784 * 179.91390 * 5 4 3 7 7 O 1.21503 * 120.00080 * 359.70105 * 6 5 4 8 8 N 1.34777 * 120.00028 * 179.70657 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27546 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00490 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99545 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47199 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47080 * 119.99932 * 15 13 11 18 18 H 1.48498 * 109.47127 * 239.99826 * 15 13 11 19 19 N 1.30978 * 106.12479 * 359.64516 * 5 4 3 20 20 O 1.20908 * 111.43902 * 0.22643 * 19 5 4 21 21 H 1.08996 * 109.47573 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47004 * 300.00117 * 1 2 3 23 23 H 1.09005 * 109.47161 * 59.99757 * 1 2 3 24 24 H 1.09005 * 109.46855 * 240.00172 * 2 1 3 25 25 H 1.08992 * 109.46878 * 120.00345 * 2 1 3 26 26 H 1.07999 * 128.03814 * 359.96473 * 4 3 2 27 27 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 29 29 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 30 30 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 31 31 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 32 32 H 0.97004 * 119.99855 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3068 2.1808 1.0854 5 6 2.7395 3.4195 0.5354 6 6 3.1673 4.6264 1.2842 7 8 3.1652 4.6200 2.4992 8 7 3.5583 5.7301 0.6168 9 6 3.9866 6.9200 1.3563 10 6 4.3820 8.0195 0.3686 11 6 4.8220 9.2437 1.1293 12 1 4.8194 9.2383 2.2093 13 6 5.2278 10.3708 0.4466 14 7 5.2314 10.3772 -0.8686 15 14 5.7725 11.8885 1.3895 16 1 5.6772 11.6258 2.8480 17 1 7.1779 12.2128 1.0362 18 1 4.8959 13.0332 1.0340 19 7 2.6894 3.2771 -0.7657 20 8 2.2995 2.1752 -1.0750 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.2163 1.9106 2.1271 27 1 3.5603 5.7351 -0.3532 28 1 3.1676 7.2723 1.9835 29 1 4.8425 6.6698 1.9831 30 1 5.2010 7.6671 -0.2585 31 1 3.5262 8.2698 -0.2583 32 1 5.5173 11.1700 -1.3489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260287213.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:16 Heat of formation + Delta-G solvation = -17.947474 kcal Electronic energy + Delta-G solvation = -15930.549002 eV Core-core repulsion = 13086.027867 eV Total energy + Delta-G solvation = -2844.521135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.21404 -40.76425 -36.80072 -35.84293 -35.14517 -34.70920 -31.73859 -31.06376 -27.43021 -25.53520 -24.90126 -23.55528 -22.83467 -21.14483 -18.97431 -18.61888 -18.57846 -17.89041 -16.82861 -16.60125 -16.49387 -15.57783 -15.35287 -14.97775 -14.83744 -14.38417 -14.31568 -13.48884 -13.29596 -13.00359 -12.91084 -12.55172 -12.39506 -12.35652 -11.83789 -11.82921 -11.60023 -11.58804 -11.28400 -10.65804 -10.48960 -10.24110 -8.27278 -6.38903 -0.00774 0.63189 1.40314 1.40564 1.54368 1.80044 1.96756 2.05236 2.39654 2.84423 3.07507 3.46616 3.88247 4.05485 4.17512 4.37422 4.38714 4.39432 4.46319 4.73194 4.74841 4.98445 5.05495 5.08908 5.16590 5.38443 5.42671 5.48598 5.72307 6.08691 6.26365 6.73623 6.84942 7.00994 7.30890 8.85195 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.068306 B = 0.003817 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.821178 B = 7334.020214 C = 7629.439007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.013 4.013 4 C -0.191 4.191 5 C -0.048 4.048 6 C 0.590 3.410 7 O -0.561 6.561 8 N -0.704 5.704 9 C 0.139 3.861 10 C 0.021 3.979 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.970 3.030 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.351 5.351 20 O 0.131 5.869 21 H 0.092 0.908 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.195 0.805 27 H 0.410 0.590 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -22.168 0.370 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 C -0.077 4.077 4 C -0.214 4.214 5 C -0.205 4.205 6 C 0.374 3.626 7 O -0.439 6.439 8 N -0.354 5.354 9 C 0.016 3.984 10 C -0.017 4.017 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 N -0.050 5.050 20 O 0.053 5.947 21 H 0.111 0.889 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.140 0.860 26 H 0.212 0.788 27 H 0.245 0.755 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.003 -21.140 0.110 22.604 hybrid contribution 0.319 0.959 0.449 1.106 sum -7.685 -20.180 0.559 21.601 Atomic orbital electron populations 1.21833 0.92875 1.04027 1.02302 1.20455 0.96902 0.83156 1.07121 1.25293 1.00183 0.98251 0.83937 1.22667 1.05321 0.90535 1.02874 1.23436 1.08210 0.98212 0.90660 1.17274 0.77244 0.81732 0.86305 1.90740 1.55971 1.83452 1.13715 1.46126 1.64759 1.13196 1.11310 1.21424 0.98551 0.83398 0.95020 1.19156 0.95799 0.92406 0.94290 1.21471 1.44809 0.98444 0.93729 0.91819 1.25945 0.95312 1.02300 0.95858 1.70085 1.48250 1.30529 1.07911 0.85315 0.77949 0.78303 0.78984 1.18680 1.20198 1.20190 1.74211 1.14773 1.00488 1.15550 1.84749 1.59014 1.16728 1.34244 0.88933 0.92680 0.92798 0.87074 0.85954 0.78799 0.75489 0.92414 0.92410 0.97505 0.97512 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.38 16 2 C -0.04 -0.29 6.50 29.85 0.19 -0.09 16 3 C -0.01 -0.24 6.73 25.01 0.17 -0.07 16 4 C -0.19 -4.41 10.92 22.60 0.25 -4.17 16 5 C -0.05 -1.50 7.19 42.96 0.31 -1.19 16 6 C 0.59 22.62 7.85 86.93 0.68 23.30 16 7 O -0.56 -24.16 16.95 -3.73 -0.06 -24.22 16 8 N -0.70 -27.97 5.55 -465.50 -2.59 -30.56 16 9 C 0.14 6.25 5.61 86.38 0.48 6.74 16 10 C 0.02 1.10 5.09 29.85 0.15 1.25 16 11 C -0.55 -31.07 9.11 25.60 0.23 -30.83 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 15 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 N -0.35 -10.49 11.84 -49.52 -0.59 -11.08 16 20 O 0.13 3.06 11.18 71.91 0.80 3.86 16 21 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 22 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.41 15.39 8.23 -92.71 -0.76 14.62 16 28 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -69.65 289.63 3.89 -65.76 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.37 Total: 10.16 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 3.64 Total: -4.72 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -2.89 Total: -96.99 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.74 Total: -20.36 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -69.65 3.89 -65.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260287213.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds