Wall clock time and date at job start Sun Mar 29 2020 22:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47367 * 2 1 4 4 C 1.35320 * 126.66564 * 89.99774 * 3 2 1 5 5 C 1.42270 * 103.92481 * 179.97438 * 4 3 2 6 6 C 1.48332 * 126.93900 * 179.97438 * 5 4 3 7 7 O 1.21493 * 119.99753 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00059 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00376 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.50697 * 109.47081 * 155.00043 * 9 8 6 13 13 H 1.07999 * 120.00055 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47262 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46882 * 119.99668 * 16 14 12 19 19 H 1.48493 * 109.47394 * 239.99732 * 16 14 12 20 20 N 1.30982 * 106.11898 * 0.26621 * 5 4 3 21 21 O 1.20907 * 111.44589 * 359.53067 * 20 5 4 22 22 H 1.09002 * 109.46850 * 60.00122 * 1 2 3 23 23 H 1.08995 * 109.47313 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47023 * 299.99848 * 1 2 3 25 25 H 1.09000 * 109.47023 * 240.00152 * 2 1 3 26 26 H 1.09003 * 109.47235 * 120.00549 * 2 1 3 27 27 H 1.08005 * 128.03758 * 0.02562 * 4 3 2 28 28 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 29 29 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 31 31 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 32 32 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3017 2.1826 1.0855 5 6 2.7397 3.4194 0.5355 6 6 3.1663 4.6267 1.2843 7 8 3.1636 4.6204 2.4992 8 7 3.5568 5.7306 0.6170 9 6 3.9787 6.9228 1.3565 10 1 4.4973 6.6212 2.2665 11 6 2.7497 7.7572 1.7226 12 6 4.9061 7.7441 0.4984 13 1 5.1560 7.4115 -0.4982 14 6 5.4357 8.9201 0.9858 15 7 5.1310 9.3254 2.1993 16 14 6.5848 9.9386 -0.0780 17 1 6.7651 9.2707 -1.3920 18 1 6.0011 11.2883 -0.2855 19 1 7.9010 10.0671 0.5973 20 7 2.6842 3.2788 -0.7656 21 8 2.2997 2.1751 -1.0750 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2070 1.9138 2.1272 28 1 3.5586 5.7357 -0.3531 29 1 2.2310 8.0589 0.8126 30 1 3.0636 8.6441 2.2732 31 1 2.0788 7.1631 2.3433 32 1 5.5039 10.1526 2.5423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:21 Heat of formation + Delta-G solvation = -11.091407 kcal Electronic energy + Delta-G solvation = -16440.057018 eV Core-core repulsion = 13595.833184 eV Total energy + Delta-G solvation = -2844.223834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.18029 -40.65191 -36.91715 -35.82673 -35.03619 -34.28465 -31.30589 -30.81711 -27.43160 -26.12119 -24.93218 -23.67491 -22.48976 -21.05809 -19.09494 -18.85989 -18.29586 -17.55716 -17.22259 -16.22632 -15.93368 -15.49939 -15.31321 -14.83692 -14.51702 -14.34519 -13.83742 -13.48306 -13.11236 -12.98083 -12.87699 -12.79237 -12.38322 -12.36100 -12.18192 -11.82161 -11.54300 -11.31870 -11.18386 -10.67791 -10.46266 -9.98069 -8.23867 -6.42084 0.06386 0.67016 1.42001 1.42458 1.55324 1.93879 2.09599 2.15623 2.40706 2.95286 3.06513 3.55142 3.91183 4.12002 4.23075 4.38554 4.47631 4.64771 4.74882 4.82630 4.97392 5.00208 5.09359 5.17429 5.28582 5.43294 5.45002 5.56745 5.76190 5.98974 6.59397 6.65194 7.02772 7.12139 7.31745 8.83048 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051946 B = 0.004886 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.893611 B = 5729.526718 C = 6044.530002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.038 4.038 3 C -0.013 4.013 4 C -0.195 4.195 5 C -0.046 4.046 6 C 0.580 3.420 7 O -0.574 6.574 8 N -0.689 5.689 9 C 0.268 3.732 10 H 0.009 0.991 11 C -0.134 4.134 12 C -0.553 4.553 13 H 0.069 0.931 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.976 3.024 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.279 1.279 20 N -0.350 5.350 21 O 0.132 5.868 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.191 0.809 28 H 0.404 0.596 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.015 0.985 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -18.053 -6.518 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 C -0.077 4.077 4 C -0.218 4.218 5 C -0.204 4.204 6 C 0.364 3.636 7 O -0.453 6.453 8 N -0.337 5.337 9 C 0.165 3.835 10 H 0.026 0.974 11 C -0.193 4.193 12 C -0.591 4.591 13 H 0.087 0.913 14 C -0.182 4.182 15 N -0.552 5.552 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.205 1.205 20 N -0.049 5.049 21 O 0.054 5.946 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.208 0.792 28 H 0.239 0.761 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.425 -16.970 -6.512 19.634 hybrid contribution 0.544 0.728 0.280 0.951 sum -6.880 -16.242 -6.232 18.708 Atomic orbital electron populations 1.21831 0.92817 1.04041 1.02284 1.20450 0.96939 0.83036 1.07107 1.25273 1.00249 0.98277 0.83870 1.22652 1.05469 0.90797 1.02832 1.23518 1.07872 0.98283 0.90698 1.17417 0.77712 0.82052 0.86414 1.90710 1.56636 1.83773 1.14172 1.46301 1.63358 1.13179 1.10852 1.18556 0.92594 0.80666 0.91662 0.97354 1.21912 0.96800 1.01106 0.99459 1.21503 1.28852 1.07252 1.01530 0.91336 1.25789 0.97798 0.98222 0.96412 1.70033 1.44493 1.23346 1.17297 0.85237 0.77943 0.78159 0.78642 1.18802 1.20016 1.20493 1.74174 1.14941 1.00365 1.15391 1.84734 1.59184 1.16559 1.34122 0.92684 0.88825 0.92847 0.86895 0.86123 0.79208 0.76100 0.94204 0.90708 0.96571 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.04 -0.36 6.50 29.85 0.19 -0.17 16 3 C -0.01 -0.27 6.73 25.01 0.17 -0.11 16 4 C -0.19 -5.32 10.92 22.60 0.25 -5.07 16 5 C -0.05 -1.68 7.19 42.96 0.31 -1.37 16 6 C 0.58 26.46 7.81 86.93 0.68 27.14 16 7 O -0.57 -29.72 16.62 -3.69 -0.06 -29.78 16 8 N -0.69 -32.55 5.07 -448.53 -2.27 -34.82 16 9 C 0.27 14.67 2.56 44.24 0.11 14.79 16 10 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 11 C -0.13 -7.07 9.26 71.98 0.67 -6.40 16 12 C -0.55 -30.71 8.73 25.60 0.22 -30.49 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C 0.02 1.01 5.30 84.66 0.45 1.46 16 15 N -0.91 -52.86 11.32 21.45 0.24 -52.62 16 16 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 N -0.35 -11.60 11.84 -49.50 -0.59 -12.18 16 21 O 0.13 3.42 11.18 71.87 0.80 4.22 16 22 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.40 17.48 8.30 -92.70 -0.77 16.71 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 4.22 6.07 -2.39 -0.01 4.21 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.28 284.82 4.28 -65.00 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.37 Total: 16.08 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 3.76 Total: -0.86 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -2.62 Total: -99.62 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.28 4.28 -65.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.907 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds