Wall clock time and date at job start Sun Mar 29 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47029 * 325.00232 * 9 8 6 11 11 C 1.53002 * 109.47146 * 84.99404 * 9 8 6 12 12 C 1.50691 * 109.47343 * 204.99536 * 9 8 6 13 13 H 1.08005 * 120.00090 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00386 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00015 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00412 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47004 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47404 * 120.00158 * 16 14 12 19 19 H 1.48500 * 109.47156 * 240.00327 * 16 14 12 20 20 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 21 21 O 1.20907 * 111.43916 * 0.39539 * 20 5 4 22 22 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 23 23 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 25 25 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 26 26 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 27 27 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 28 28 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 29 29 H 1.08999 * 109.47405 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.47391 * 300.00413 * 11 9 8 31 31 H 1.09005 * 109.46903 * 60.00358 * 11 9 8 32 32 H 0.96993 * 120.00772 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 3.3580 7.0207 2.2655 11 6 5.4330 6.8166 1.7241 12 6 3.7419 8.1523 0.4974 13 1 3.3394 8.0483 -0.4994 14 6 4.0620 9.4018 0.9846 15 7 4.5516 9.5286 2.1986 16 14 3.8004 10.9145 -0.0796 17 1 3.2419 10.5050 -1.3932 18 1 2.8519 11.8365 0.5952 19 1 5.0989 11.6046 -0.2868 20 7 2.6880 3.2775 -0.7658 21 8 2.2986 2.1755 -1.0751 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.2066 1.9140 2.1271 28 1 3.5412 5.7418 -0.3533 29 1 5.7410 7.7054 2.2747 30 1 5.5853 5.9339 2.3452 31 1 6.0275 6.7279 0.8147 32 1 4.7765 10.4076 2.5416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260325277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:25 Heat of formation + Delta-G solvation = 10.224153 kcal Electronic energy + Delta-G solvation = -16439.228678 eV Core-core repulsion = 13595.929156 eV Total energy + Delta-G solvation = -2843.299522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.93988 -38.82428 -35.12044 -34.82468 -33.66976 -32.34907 -30.23234 -28.94365 -25.30315 -24.66864 -24.11017 -22.37625 -20.70826 -19.30134 -17.78508 -17.50915 -16.81975 -15.79177 -15.27302 -14.79185 -14.46430 -14.22938 -14.05332 -13.48671 -13.13151 -12.82150 -12.45446 -12.04687 -11.76985 -11.63200 -11.19422 -11.08408 -11.00081 -10.80761 -10.35709 -10.25719 -10.19850 -9.46445 -9.41634 -9.07430 -8.58576 -8.01739 -6.14146 -4.23382 1.32884 1.85071 2.99012 3.24135 3.31678 3.35318 3.71090 3.76743 4.24703 4.34211 4.63595 4.80933 4.89373 5.13247 5.15548 5.18811 5.42538 5.50322 5.67544 5.71903 5.87702 5.99677 6.78745 6.92147 7.09552 7.33564 7.49306 7.66356 7.85853 8.10218 8.15620 8.57496 8.71704 8.96714 9.43676 10.92110 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.047577 B = 0.004924 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.377319 B = 5684.758076 C = 5982.083593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.044 4.044 4 C -0.182 4.182 5 C -0.014 4.014 6 C 0.580 3.420 7 O -0.538 6.538 8 N -0.688 5.688 9 C 0.262 3.738 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.534 4.534 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.335 5.335 21 O 0.115 5.885 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.178 0.822 28 H 0.396 0.604 29 H 0.093 0.907 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -17.049 -4.870 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.107 4.107 4 C -0.204 4.204 5 C -0.174 4.174 6 C 0.362 3.638 7 O -0.415 6.415 8 N -0.335 5.335 9 C 0.161 3.839 10 H 0.070 0.930 11 C -0.206 4.206 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.521 5.521 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.037 5.037 21 O 0.041 5.959 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.195 0.805 28 H 0.229 0.771 29 H 0.112 0.888 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.990 -15.985 -4.850 17.434 hybrid contribution -0.169 0.572 -0.225 0.638 sum -5.160 -15.412 -5.075 17.027 Atomic orbital electron populations 1.21812 0.93537 1.02603 1.03061 1.20094 0.96598 0.86302 1.04728 1.24461 1.03255 0.97158 0.85813 1.22441 1.04848 0.91814 1.01332 1.23977 1.05028 0.98473 0.89880 1.16983 0.78804 0.81469 0.86579 1.90749 1.55516 1.82735 1.12506 1.46510 1.63234 1.13161 1.10630 1.18891 0.92533 0.79570 0.92892 0.92985 1.22092 0.98151 1.01031 0.99360 1.21240 1.44150 0.90714 1.01169 0.91877 1.24883 0.94556 0.99022 0.95187 1.69907 1.42602 1.23907 1.15679 0.86352 0.77917 0.82295 0.80326 1.19674 1.20814 1.20796 1.74183 1.14519 0.98964 1.16007 1.84763 1.60246 1.17419 1.33430 0.91992 0.91322 0.91935 0.89312 0.88452 0.80483 0.77111 0.88831 0.96535 0.95279 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.04 -0.27 6.50 -27.88 -0.18 -0.45 16 3 C -0.04 -0.51 6.73 -35.35 -0.24 -0.74 16 4 C -0.18 -2.60 10.92 -39.07 -0.43 -3.03 16 5 C -0.01 -0.25 7.19 -82.53 -0.59 -0.84 16 6 C 0.58 12.84 7.81 -12.11 -0.09 12.74 16 7 O -0.54 -13.39 16.61 5.37 0.09 -13.30 16 8 N -0.69 -15.79 5.07 -55.73 -0.28 -16.07 16 9 C 0.26 6.94 2.56 -69.08 -0.18 6.76 16 10 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 11 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 12 C -0.53 -14.62 8.73 -34.45 -0.30 -14.92 16 13 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 15 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.33 -5.69 11.84 33.29 0.39 -5.29 16 21 O 0.12 1.61 11.18 17.23 0.19 1.81 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.18 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.40 8.40 8.30 -40.82 -0.34 8.06 16 29 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 284.82 15.07 4.29 4.29 Total: -1.00 -31.24 284.82 -5.07 -36.32 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -3.97 Total: 3.53 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.39 Total: -2.78 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.74 Total: -45.84 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.28 Total: -11.49 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.24 -5.07 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.541 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds