Wall clock time and date at job start Sun Mar 29 2020 22:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47058 * 2 1 4 4 C 1.35315 * 126.66744 * 90.00897 * 3 2 1 5 5 C 1.42274 * 103.92180 * 180.24413 * 4 3 2 6 6 C 1.48326 * 126.93640 * 179.75467 * 5 4 3 7 7 O 1.21495 * 120.00375 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00011 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47029 * 325.00232 * 9 8 6 11 11 C 1.53002 * 109.47146 * 84.99404 * 9 8 6 12 12 C 1.50691 * 109.47343 * 204.99536 * 9 8 6 13 13 H 1.08005 * 120.00090 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00386 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00015 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00412 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47004 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47404 * 120.00158 * 16 14 12 19 19 H 1.48500 * 109.47156 * 240.00327 * 16 14 12 20 20 N 1.30987 * 106.12343 * 359.62919 * 5 4 3 21 21 O 1.20907 * 111.43916 * 0.39539 * 20 5 4 22 22 H 1.08995 * 109.47509 * 59.99361 * 1 2 3 23 23 H 1.08996 * 109.47148 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46910 * 299.99560 * 1 2 3 25 25 H 1.09008 * 109.46636 * 240.00068 * 2 1 3 26 26 H 1.08995 * 109.47509 * 120.00638 * 2 1 3 27 27 H 1.08002 * 128.03456 * 359.97329 * 4 3 2 28 28 H 0.96994 * 120.00301 * 359.97438 * 8 6 5 29 29 H 1.08999 * 109.47405 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.47391 * 300.00413 * 11 9 8 31 31 H 1.09005 * 109.46903 * 60.00358 * 11 9 8 32 32 H 0.96993 * 120.00772 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7335 3.4216 0.5353 6 6 3.1533 4.6313 1.2841 7 8 3.1492 4.6256 2.4990 8 7 3.5383 5.7371 0.6166 9 6 3.9524 6.9321 1.3562 10 1 3.3580 7.0207 2.2655 11 6 5.4330 6.8166 1.7241 12 6 3.7419 8.1523 0.4974 13 1 3.3394 8.0483 -0.4994 14 6 4.0620 9.4018 0.9846 15 7 4.5516 9.5286 2.1986 16 14 3.8004 10.9145 -0.0796 17 1 3.2419 10.5050 -1.3932 18 1 2.8519 11.8365 0.5952 19 1 5.0989 11.6046 -0.2868 20 7 2.6880 3.2775 -0.7658 21 8 2.2986 2.1755 -1.0751 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.2066 1.9140 2.1271 28 1 3.5412 5.7418 -0.3533 29 1 5.7410 7.7054 2.2747 30 1 5.5853 5.9339 2.3452 31 1 6.0275 6.7279 0.8147 32 1 4.7765 10.4076 2.5416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:24 Heat of formation + Delta-G solvation = -11.101498 kcal Electronic energy + Delta-G solvation = -16440.153427 eV Core-core repulsion = 13595.929156 eV Total energy + Delta-G solvation = -2844.224271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.17967 -40.65168 -36.91663 -35.82692 -35.03562 -34.28416 -31.30625 -30.81675 -27.43148 -26.12185 -24.93318 -23.67593 -22.48816 -21.05881 -19.10998 -18.83934 -18.29570 -17.56223 -17.22615 -16.22222 -15.93849 -15.48792 -15.31435 -14.84561 -14.51683 -14.34986 -13.82664 -13.48615 -13.11023 -12.98278 -12.87912 -12.79326 -12.38336 -12.36050 -12.18219 -11.82197 -11.54242 -11.31811 -11.18453 -10.67768 -10.46311 -9.98068 -8.23873 -6.42093 0.06366 0.67011 1.41955 1.42437 1.55281 1.93888 2.09497 2.15759 2.40694 2.95293 3.06501 3.55167 3.91169 4.12018 4.23065 4.38455 4.47545 4.64861 4.74889 4.82753 4.97426 5.00193 5.09199 5.17321 5.28626 5.43231 5.44993 5.56789 5.76231 5.99038 6.59389 6.65187 7.02777 7.12146 7.31740 8.83068 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.047577 B = 0.004924 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.377319 B = 5684.758076 C = 5982.083593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 C -0.013 4.013 4 C -0.195 4.195 5 C -0.046 4.046 6 C 0.580 3.420 7 O -0.574 6.574 8 N -0.689 5.689 9 C 0.268 3.732 10 H 0.008 0.992 11 C -0.134 4.134 12 C -0.553 4.553 13 H 0.068 0.932 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.976 3.024 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.275 1.275 20 N -0.350 5.350 21 O 0.132 5.868 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.191 0.809 28 H 0.404 0.596 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.039 0.961 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 -18.659 -6.516 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 C -0.077 4.077 4 C -0.217 4.217 5 C -0.204 4.204 6 C 0.364 3.636 7 O -0.453 6.453 8 N -0.337 5.337 9 C 0.165 3.835 10 H 0.026 0.974 11 C -0.193 4.193 12 C -0.591 4.591 13 H 0.086 0.914 14 C -0.182 4.182 15 N -0.552 5.552 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.200 1.200 20 N -0.049 5.049 21 O 0.054 5.946 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.208 0.792 28 H 0.239 0.761 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.658 -17.592 -6.510 19.593 hybrid contribution -0.016 0.925 0.280 0.966 sum -5.674 -16.667 -6.230 18.676 Atomic orbital electron populations 1.21834 0.92885 1.04039 1.02260 1.20450 0.96885 0.83033 1.07135 1.25275 1.00296 0.98233 0.83868 1.22651 1.05588 0.90671 1.02832 1.23519 1.07960 0.98203 0.90698 1.17416 0.77582 0.82184 0.86414 1.90711 1.56794 1.83617 1.14171 1.46301 1.63775 1.12766 1.10851 1.18555 0.92158 0.81106 0.91652 0.97370 1.21914 0.97890 1.00022 0.99469 1.21500 1.44743 0.91386 1.01493 0.91351 1.25788 0.93927 1.02089 0.96414 1.70033 1.43003 1.24872 1.17266 0.85236 0.78019 0.78087 0.78636 1.18812 1.20511 1.19995 1.74177 1.14918 1.00381 1.15387 1.84735 1.59035 1.16710 1.34124 0.92715 0.88804 0.92895 0.86863 0.86077 0.79206 0.76102 0.90700 0.96558 0.94190 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.04 -0.36 6.50 29.85 0.19 -0.16 16 3 C -0.01 -0.27 6.73 25.01 0.17 -0.11 16 4 C -0.19 -5.31 10.92 22.60 0.25 -5.07 16 5 C -0.05 -1.68 7.19 42.96 0.31 -1.37 16 6 C 0.58 26.46 7.81 86.93 0.68 27.14 16 7 O -0.57 -29.72 16.61 -3.70 -0.06 -29.78 16 8 N -0.69 -32.55 5.07 -448.52 -2.27 -34.82 16 9 C 0.27 14.68 2.56 44.24 0.11 14.79 16 10 H 0.01 0.53 7.58 -2.39 -0.02 0.51 16 11 C -0.13 -7.07 9.26 71.98 0.67 -6.41 16 12 C -0.55 -30.70 8.73 25.60 0.22 -30.48 16 13 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 14 C 0.02 1.01 5.30 84.65 0.45 1.46 16 15 N -0.91 -52.86 11.32 21.45 0.24 -52.62 16 16 Si 0.98 42.95 29.54 68.60 2.03 44.97 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 N -0.35 -11.59 11.84 -49.51 -0.59 -12.18 16 21 O 0.13 3.42 11.18 71.83 0.80 4.22 16 22 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 28 H 0.40 17.48 8.30 -92.71 -0.77 16.71 16 29 H 0.07 4.23 6.07 -2.39 -0.01 4.21 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.30 284.82 4.28 -65.02 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.37 Total: 16.08 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.76 Total: -0.89 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -2.62 Total: -99.62 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.30 4.28 -65.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.918 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds