Wall clock time and date at job start Sun Mar 29 2020 21:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47337 * 67.20750 * 3 2 1 5 5 C 1.37096 * 119.99826 * 263.73451 * 4 3 2 6 6 H 1.08000 * 120.00118 * 194.17816 * 5 4 3 7 7 C 1.38949 * 120.00109 * 14.17964 * 5 4 3 8 8 N 1.31411 * 119.99921 * 11.52298 * 7 5 4 9 9 Si 1.86801 * 120.00348 * 191.52039 * 7 5 4 10 10 H 1.48500 * 109.46949 * 89.99905 * 9 7 5 11 11 H 1.48494 * 109.47258 * 210.00224 * 9 7 5 12 12 H 1.48501 * 109.47119 * 330.00334 * 9 7 5 13 13 C 1.34777 * 120.00266 * 83.73695 * 4 3 2 14 14 O 1.21294 * 119.99819 * 3.68664 * 13 4 3 15 15 C 1.50699 * 120.00349 * 183.68036 * 13 4 3 16 16 H 1.09000 * 109.57309 * 307.17158 * 15 13 4 17 17 C 1.53168 * 109.52402 * 187.00803 * 15 13 4 18 18 C 1.53183 * 109.03666 * 183.11606 * 17 15 13 19 19 C 1.53094 * 109.16265 * 56.97798 * 18 17 15 20 20 O 1.42898 * 109.41725 * 302.39647 * 19 18 17 21 21 C 1.42908 * 114.09980 * 61.15304 * 20 19 18 22 22 H 1.08999 * 109.47053 * 307.20215 * 3 2 1 23 23 H 1.09006 * 109.46889 * 187.20823 * 3 2 1 24 24 H 0.97004 * 120.00299 * 179.97438 * 8 7 5 25 25 H 1.08996 * 109.54629 * 63.25115 * 17 15 13 26 26 H 1.09005 * 109.54504 * 302.97882 * 17 15 13 27 27 H 1.09000 * 109.51847 * 297.07754 * 18 17 15 28 28 H 1.08998 * 109.52213 * 176.88692 * 18 17 15 29 29 H 1.08993 * 109.47887 * 182.40630 * 19 18 17 30 30 H 1.08998 * 109.47867 * 62.37787 * 19 18 17 31 31 H 1.09003 * 109.47568 * 58.83057 * 21 20 19 32 32 H 1.09000 * 109.47885 * 178.85758 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.5342 -1.2733 5 6 3.4479 -1.8557 -1.3721 6 1 4.0160 -2.2013 -2.2230 7 6 3.0729 -2.7504 -0.3773 8 7 2.1987 -2.3900 0.5351 9 14 3.8115 -4.4658 -0.3370 10 1 5.0476 -4.4532 0.4859 11 1 2.8325 -5.4125 0.2547 12 1 4.1418 -4.8951 -1.7197 13 6 3.2009 0.2729 -2.3477 14 8 2.9542 1.4559 -2.2437 15 6 3.6241 -0.2944 -3.6781 16 1 4.5550 -0.8488 -3.5592 17 6 3.8321 0.8467 -4.6784 18 6 4.1856 0.2542 -6.0460 19 6 3.0740 -0.7044 -6.4809 20 8 2.9115 -1.7232 -5.4922 21 6 2.5341 -1.2318 -4.2045 22 1 2.9716 -0.6205 0.8185 23 1 2.9709 1.0204 0.1290 24 1 1.9366 -3.0147 1.2294 25 1 4.6454 1.4870 -4.3372 26 1 2.9157 1.4314 -4.7603 27 1 5.1279 -0.2891 -5.9749 28 1 4.2812 1.0569 -6.7771 29 1 3.3406 -1.1616 -7.4337 30 1 2.1406 -0.1525 -6.5910 31 1 1.5935 -0.6868 -4.2847 32 1 2.4117 -2.0691 -3.5174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263910884.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:49 Heat of formation + Delta-G solvation = -68.228201 kcal Electronic energy + Delta-G solvation = -17530.661189 eV Core-core repulsion = 14683.959718 eV Total energy + Delta-G solvation = -2846.701471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26359 -39.51155 -37.53059 -36.41207 -34.45506 -33.51471 -32.34857 -29.31029 -26.81072 -25.84778 -24.79119 -21.78051 -20.85431 -19.57074 -18.30281 -17.95743 -17.04301 -16.88066 -16.33877 -16.07714 -15.84005 -15.26056 -14.85227 -14.57093 -14.29461 -14.07326 -13.64312 -13.45269 -13.33486 -13.10123 -12.91237 -12.58000 -12.34660 -12.13825 -12.05287 -11.89082 -11.73612 -11.30772 -11.11386 -10.60114 -10.29107 -9.98266 -8.30736 -5.96698 1.44264 1.55521 1.64534 1.75484 1.98306 2.22530 2.36293 2.86731 3.04039 3.19048 3.63587 3.83789 3.99076 4.01453 4.12832 4.24506 4.42594 4.56062 4.69393 4.76613 4.87400 4.95191 5.02087 5.07794 5.10917 5.24909 5.41592 5.47563 5.66727 6.24524 6.36149 6.92822 7.07208 7.43080 7.82535 8.68500 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.021339 B = 0.010291 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.854307 B = 2720.136921 C = 3524.562310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.267 3.733 3 C 0.220 3.780 4 N -0.449 5.449 5 C -0.341 4.341 6 H 0.121 0.879 7 C 0.001 3.999 8 N -0.902 5.902 9 Si 0.990 3.010 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.260 1.260 13 C 0.460 3.540 14 O -0.622 6.622 15 C -0.115 4.115 16 H 0.105 0.895 17 C -0.099 4.099 18 C -0.145 4.145 19 C 0.047 3.953 20 O -0.391 6.391 21 C 0.082 3.918 22 H 0.150 0.850 23 H 0.098 0.902 24 H 0.273 0.727 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -0.143 -8.484 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.050 4.050 3 C 0.094 3.906 4 N -0.168 5.168 5 C -0.468 4.468 6 H 0.138 0.862 7 C -0.201 4.201 8 N -0.542 5.542 9 Si 0.814 3.186 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.184 1.184 13 C 0.250 3.750 14 O -0.509 6.509 15 C -0.137 4.137 16 H 0.123 0.877 17 C -0.137 4.137 18 C -0.182 4.182 19 C -0.029 4.029 20 O -0.310 6.310 21 C 0.005 3.995 22 H 0.167 0.833 23 H 0.115 0.885 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.476 0.137 -8.295 9.940 hybrid contribution 0.222 -0.533 0.660 0.876 sum 5.698 -0.395 -7.635 9.535 Atomic orbital electron populations 1.80855 1.14747 1.14003 1.10477 1.29912 0.95924 0.88399 0.90802 1.19051 0.79893 1.00676 0.90983 1.43890 1.55651 1.09951 1.07305 1.20121 1.33936 0.82589 1.10137 0.86196 1.25990 0.95248 1.03261 0.95566 1.69951 1.29873 1.37766 1.16571 0.84939 0.77680 0.76805 0.79167 1.19302 1.22055 1.18417 1.20730 0.81810 0.86194 0.86277 1.90534 1.57084 1.17520 1.85742 1.21625 1.01417 0.98503 0.92108 0.87728 1.21391 1.01922 0.96006 0.94416 1.22187 0.99753 1.00032 0.96262 1.22882 0.97823 0.90180 0.92003 1.87926 1.89835 1.33953 1.19291 1.22348 0.94153 0.98263 0.84767 0.83345 0.88476 0.91639 0.91290 0.93000 0.90253 0.88333 0.86277 0.93411 0.95163 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.93 18.54 20.01 0.37 -26.56 16 2 C 0.27 13.03 14.03 89.44 1.25 14.29 16 3 C 0.22 9.71 5.09 84.57 0.43 10.14 16 4 N -0.45 -20.24 2.61 -645.42 -1.68 -21.93 16 5 C -0.34 -15.03 7.74 84.04 0.65 -14.38 16 6 H 0.12 4.94 5.73 -2.91 -0.02 4.92 16 7 C 0.00 0.03 5.17 84.93 0.44 0.46 16 8 N -0.90 -42.87 8.92 21.66 0.19 -42.67 16 9 Si 0.99 36.28 29.57 68.60 2.03 38.31 16 10 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 11 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 13 C 0.46 20.27 6.88 87.66 0.60 20.87 16 14 O -0.62 -30.33 15.59 -3.07 -0.05 -30.38 16 15 C -0.12 -4.18 1.88 -11.45 -0.02 -4.20 16 16 H 0.10 3.61 7.19 -2.39 -0.02 3.59 16 17 C -0.10 -3.08 4.69 30.71 0.14 -2.94 16 18 C -0.14 -3.32 6.14 30.69 0.19 -3.13 16 19 C 0.05 1.15 6.84 72.01 0.49 1.64 16 20 O -0.39 -12.72 10.77 -148.98 -1.60 -14.33 16 21 C 0.08 3.02 5.84 72.01 0.42 3.44 16 22 H 0.15 6.51 5.79 -2.39 -0.01 6.49 16 23 H 0.10 3.94 7.57 -2.38 -0.02 3.92 16 24 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.77 7.93 -2.38 -0.02 1.75 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 4.08 6.10 -2.39 -0.01 4.07 16 Total: -1.00 -57.63 269.08 5.00 -52.63 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.13 Total: 18.74 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 4.60 Total: 26.19 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.12 Total: -91.16 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.65 Total: -44.71 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -57.63 5.00 -52.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263910884.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.596 kcal (2) G-P(sol) polarization free energy of solvation -57.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds