Wall clock time and date at job start Sun Mar 29 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50688 * 109.47491 * 2 1 4 4 O 1.34261 * 126.52906 * 270.02712 * 3 2 1 5 5 C 1.34050 * 108.23012 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47639 * 359.61586 * 6 5 4 8 8 C 1.47424 * 126.45042 * 180.15608 * 7 6 5 9 9 O 1.21616 * 120.00216 * 180.26352 * 8 7 6 10 10 N 1.34777 * 119.99758 * 0.26735 * 8 7 6 11 11 C 1.46496 * 119.99954 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47592 * 34.99843 * 11 10 8 13 13 C 1.52997 * 109.47109 * 274.99908 * 11 10 8 14 14 C 1.50707 * 109.47227 * 154.99955 * 11 10 8 15 15 H 1.07998 * 119.99930 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99926 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00031 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99744 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47130 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46701 * 120.00315 * 18 16 14 21 21 H 1.48497 * 109.47383 * 240.00032 * 18 16 14 22 22 H 1.08996 * 109.46812 * 300.00172 * 1 2 3 23 23 H 1.08998 * 109.46917 * 59.99448 * 1 2 3 24 24 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46977 * 239.99633 * 2 1 3 26 26 H 1.08998 * 109.46917 * 120.00552 * 2 1 3 27 27 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.47572 * 299.99831 * 13 11 10 30 30 H 1.08999 * 109.47612 * 60.00126 * 13 11 10 31 31 H 1.09008 * 109.47271 * 180.02562 * 13 11 10 32 32 H 0.97002 * 120.00145 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2984 2.1743 -1.0789 5 6 2.7223 3.3743 -0.6580 6 7 2.7346 3.3927 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1589 1.7772 2.5032 9 8 1.7642 0.6598 2.7762 10 7 2.4651 2.6434 3.4893 11 6 2.3230 2.2387 4.8901 12 1 2.5756 1.1832 4.9908 13 6 0.8784 2.4626 5.3416 14 6 3.2504 3.0611 5.7472 15 1 3.8828 3.8101 5.2938 16 6 3.2916 2.8574 7.1102 17 7 2.5220 1.9450 7.6623 18 14 4.4417 3.8764 8.1725 19 1 5.1953 4.8266 7.3156 20 1 3.6491 4.6347 9.1735 21 1 5.3944 2.9782 8.8731 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.0124 4.1947 -1.2978 28 1 2.7802 3.5346 3.2716 29 1 0.6257 3.5182 5.2410 30 1 0.2076 1.8678 4.7218 31 1 0.7728 2.1619 6.3840 32 1 2.5512 1.8014 8.6212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265754111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:18 Heat of formation + Delta-G solvation = -28.081112 kcal Electronic energy + Delta-G solvation = -16831.507871 eV Core-core repulsion = 13986.547309 eV Total energy + Delta-G solvation = -2844.960563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.28993 -38.68036 -34.94803 -34.67714 -33.89151 -32.27547 -29.50852 -28.50778 -25.24455 -24.42370 -23.43282 -21.73511 -20.54458 -19.51590 -18.06251 -16.71302 -16.37272 -15.59486 -15.30160 -14.90075 -14.38296 -14.11564 -13.94500 -13.35678 -12.97183 -12.55019 -12.36940 -11.75579 -11.67287 -11.22651 -11.17652 -11.04387 -10.90570 -10.71603 -10.56426 -10.27449 -10.21047 -9.25946 -9.01730 -8.78773 -8.53029 -7.87162 -6.10019 -4.18522 1.31339 2.30797 2.66736 3.26453 3.34021 3.37920 3.92981 3.93937 4.27495 4.43072 4.73265 5.06628 5.22163 5.24117 5.35004 5.47114 5.60726 5.86837 5.88914 6.17268 6.25006 6.31038 6.84790 6.99343 7.16358 7.44612 7.50190 7.65596 7.75569 7.94645 8.16337 8.69861 8.79403 9.10533 9.48649 10.96220 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037853 B = 0.005999 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.517419 B = 4666.322905 C = 5179.962365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C 0.030 3.970 4 O -0.205 6.205 5 C 0.162 3.838 6 N -0.460 5.460 7 C -0.061 4.061 8 C 0.584 3.416 9 O -0.549 6.549 10 N -0.687 5.687 11 C 0.263 3.737 12 H 0.051 0.949 13 C -0.147 4.147 14 C -0.532 4.532 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.252 0.748 28 H 0.397 0.603 29 H 0.027 0.973 30 H 0.015 0.985 31 H 0.091 0.909 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 0.387 -15.711 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.026 4.026 4 O -0.091 6.091 5 C -0.067 4.067 6 N -0.189 5.189 7 C -0.182 4.182 8 C 0.367 3.633 9 O -0.429 6.429 10 N -0.333 5.333 11 C 0.161 3.839 12 H 0.069 0.931 13 C -0.205 4.205 14 C -0.570 4.570 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.267 0.733 28 H 0.231 0.769 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.110 0.890 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.722 0.034 -14.911 15.010 hybrid contribution 0.672 0.774 -0.023 1.025 sum -1.050 0.808 -14.934 14.992 Atomic orbital electron populations 1.21695 0.93327 1.02669 1.02371 1.20340 0.96960 0.85521 1.05199 1.23781 0.99868 0.95658 0.83333 1.84324 1.64123 1.24184 1.36518 1.27947 1.00091 0.87187 0.91445 1.70774 1.16604 1.21624 1.09894 1.21991 1.08628 0.90912 0.96625 1.16796 0.78954 0.85254 0.82279 1.90727 1.48706 1.20384 1.83053 1.46407 1.63173 1.15904 1.07850 1.18831 0.93599 0.97380 0.74052 0.93128 1.22080 0.96839 0.98178 1.03450 1.21270 1.22782 1.20828 0.92126 0.91915 1.24882 0.95780 0.95312 0.97746 1.69912 1.38335 1.32455 1.11529 0.86375 0.80485 0.79965 0.80190 1.19690 1.20864 1.20875 0.91533 0.92964 0.91250 0.90235 0.86283 0.73279 0.76903 0.95399 0.96579 0.89001 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.90 37.16 0.37 -1.34 16 2 C -0.04 -0.56 5.93 -27.89 -0.17 -0.72 16 3 C 0.03 0.45 6.69 -35.08 -0.23 0.22 16 4 O -0.20 -2.66 10.73 6.50 0.07 -2.59 16 5 C 0.16 1.90 13.19 51.96 0.69 2.59 16 6 N -0.46 -7.44 11.06 -11.48 -0.13 -7.56 16 7 C -0.06 -1.11 6.99 -83.02 -0.58 -1.69 16 8 C 0.58 12.69 7.78 -12.52 -0.10 12.59 16 9 O -0.55 -12.92 14.47 5.26 0.08 -12.84 16 10 N -0.69 -15.72 5.07 -56.01 -0.28 -16.00 16 11 C 0.26 6.92 2.56 -69.08 -0.18 6.74 16 12 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 14 C -0.53 -14.55 8.73 -34.44 -0.30 -14.85 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.17 11.32 55.43 0.63 -24.55 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.12 1.78 6.48 -51.93 -0.34 1.45 16 27 H 0.25 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.40 8.54 8.27 -40.82 -0.34 8.20 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.51 6.07 -51.92 -0.32 2.20 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -31.54 281.17 -4.56 -36.09 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.88 Total: 5.38 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.25 Total: 1.83 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.22 Total: -48.12 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.15 Total: -15.43 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.54 -4.56 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265754111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.012 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds