Wall clock time and date at job start Sun Mar 29 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50688 * 109.47491 * 2 1 4 4 O 1.34261 * 126.52906 * 270.02712 * 3 2 1 5 5 C 1.34050 * 108.23012 * 179.97438 * 4 3 2 6 6 N 1.29933 * 109.24333 * 0.24268 * 5 4 3 7 7 C 1.36066 * 108.47639 * 359.61586 * 6 5 4 8 8 C 1.47424 * 126.45042 * 180.15608 * 7 6 5 9 9 O 1.21616 * 120.00216 * 180.26352 * 8 7 6 10 10 N 1.34777 * 119.99758 * 0.26735 * 8 7 6 11 11 C 1.46496 * 119.99954 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47592 * 34.99843 * 11 10 8 13 13 C 1.52997 * 109.47109 * 274.99908 * 11 10 8 14 14 C 1.50707 * 109.47227 * 154.99955 * 11 10 8 15 15 H 1.07998 * 119.99930 * 359.97438 * 14 11 10 16 16 C 1.37876 * 119.99926 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00031 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99744 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47130 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46701 * 120.00315 * 18 16 14 21 21 H 1.48497 * 109.47383 * 240.00032 * 18 16 14 22 22 H 1.08996 * 109.46812 * 300.00172 * 1 2 3 23 23 H 1.08998 * 109.46917 * 59.99448 * 1 2 3 24 24 H 1.08997 * 109.47409 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46977 * 239.99633 * 2 1 3 26 26 H 1.08998 * 109.46917 * 120.00552 * 2 1 3 27 27 H 1.08002 * 125.37508 * 179.97438 * 5 4 3 28 28 H 0.96999 * 119.99930 * 359.97438 * 10 8 7 29 29 H 1.09002 * 109.47572 * 299.99831 * 13 11 10 30 30 H 1.08999 * 109.47612 * 60.00126 * 13 11 10 31 31 H 1.09008 * 109.47271 * 180.02562 * 13 11 10 32 32 H 0.97002 * 120.00145 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2984 2.1743 -1.0789 5 6 2.7223 3.3743 -0.6580 6 7 2.7346 3.3927 0.6412 7 6 2.3025 2.1844 1.0936 8 6 2.1589 1.7772 2.5032 9 8 1.7642 0.6598 2.7762 10 7 2.4651 2.6434 3.4893 11 6 2.3230 2.2387 4.8901 12 1 2.5756 1.1832 4.9908 13 6 0.8784 2.4626 5.3416 14 6 3.2504 3.0611 5.7472 15 1 3.8828 3.8101 5.2938 16 6 3.2916 2.8574 7.1102 17 7 2.5220 1.9450 7.6623 18 14 4.4417 3.8764 8.1725 19 1 5.1953 4.8266 7.3156 20 1 3.6491 4.6347 9.1735 21 1 5.3944 2.9782 8.8731 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.0124 4.1947 -1.2978 28 1 2.7802 3.5346 3.2716 29 1 0.6257 3.5182 5.2410 30 1 0.2076 1.8678 4.7218 31 1 0.7728 2.1619 6.3840 32 1 2.5512 1.8014 8.6212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265754111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:18 Heat of formation + Delta-G solvation = -52.575071 kcal Electronic energy + Delta-G solvation = -16832.570009 eV Core-core repulsion = 13986.547309 eV Total energy + Delta-G solvation = -2846.022700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.41377 -40.42742 -36.84085 -35.86646 -35.05502 -34.25697 -31.20135 -29.96080 -27.37760 -25.76799 -24.54601 -23.22140 -21.97503 -21.26001 -19.60043 -18.12312 -17.79614 -17.24401 -16.99431 -16.24061 -15.83320 -15.64976 -15.46564 -14.74808 -14.44341 -14.38098 -13.75772 -13.55010 -13.03834 -12.92805 -12.78712 -12.66004 -12.38746 -12.29902 -12.19417 -12.10634 -11.71275 -11.13407 -10.97438 -10.62681 -10.06421 -9.71587 -8.20020 -6.37417 0.09688 1.14011 1.43563 1.43978 1.56743 1.59747 2.31088 2.35770 2.53098 3.10163 3.21484 3.60121 3.89844 4.11079 4.25916 4.32601 4.57631 4.70689 4.79538 4.89118 4.94236 5.04464 5.15185 5.22579 5.26824 5.39694 5.56467 5.64254 5.84488 6.05768 6.47227 6.68269 6.90185 7.25752 7.41785 8.86808 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037853 B = 0.005999 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.517419 B = 4666.322905 C = 5179.962365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C 0.045 3.955 4 O -0.194 6.194 5 C 0.196 3.804 6 N -0.499 5.499 7 C -0.100 4.100 8 C 0.580 3.420 9 O -0.577 6.577 10 N -0.691 5.691 11 C 0.270 3.730 12 H 0.007 0.993 13 C -0.133 4.133 14 C -0.550 4.550 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.280 1.280 22 H 0.033 0.967 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.310 0.690 28 H 0.404 0.596 29 H 0.036 0.964 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 1.653 -17.791 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.012 4.012 4 O -0.081 6.081 5 C -0.032 4.032 6 N -0.228 5.228 7 C -0.219 4.219 8 C 0.366 3.634 9 O -0.458 6.458 10 N -0.338 5.338 11 C 0.167 3.833 12 H 0.025 0.975 13 C -0.191 4.191 14 C -0.588 4.588 15 H 0.085 0.915 16 C -0.184 4.184 17 N -0.553 5.553 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.206 1.206 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.134 0.866 26 H 0.111 0.889 27 H 0.325 0.675 28 H 0.239 0.761 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.071 1.311 -17.005 17.089 hybrid contribution 0.462 0.364 0.489 0.764 sum -0.610 1.675 -16.516 16.612 Atomic orbital electron populations 1.21665 0.92426 1.03813 1.01620 1.20427 0.97632 0.84524 1.05678 1.24010 0.97973 0.96139 0.83059 1.84385 1.63950 1.24494 1.35265 1.29247 0.96030 0.87266 0.90665 1.70709 1.18745 1.21130 1.12209 1.21453 1.12377 0.93023 0.95010 1.17272 0.77712 0.84572 0.83805 1.90697 1.49652 1.21431 1.84056 1.46189 1.64183 1.16532 1.06884 1.18463 0.93803 0.94865 0.76140 0.97542 1.21896 0.96624 0.98530 1.02084 1.21529 1.23310 1.21170 0.92796 0.91488 1.25786 0.97243 0.96328 0.98996 1.70041 1.39577 1.33695 1.12029 0.85258 0.78286 0.78335 0.78224 1.18791 1.20083 1.20573 0.94774 0.91057 0.89265 0.86625 0.88854 0.67536 0.76127 0.94485 0.96589 0.90947 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.90 71.98 0.71 -2.41 16 2 C -0.05 -1.13 5.93 29.85 0.18 -0.95 16 3 C 0.05 1.32 6.69 25.18 0.17 1.48 16 4 O -0.19 -4.36 10.73 0.35 0.00 -4.36 16 5 C 0.20 3.87 13.19 130.52 1.72 5.59 16 6 N -0.50 -15.34 11.06 -305.15 -3.37 -18.72 16 7 C -0.10 -3.62 6.99 40.41 0.28 -3.34 16 8 C 0.58 26.15 7.78 86.66 0.67 26.83 16 9 O -0.58 -28.57 14.47 -4.08 -0.06 -28.63 16 10 N -0.69 -32.73 5.07 -449.37 -2.28 -35.01 16 11 C 0.27 14.81 2.56 44.25 0.11 14.93 16 12 H 0.01 0.42 7.58 -2.39 -0.02 0.40 16 13 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 14 C -0.55 -30.66 8.73 25.60 0.22 -30.44 16 15 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 18 Si 0.97 43.14 29.54 68.60 2.03 45.16 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.09 2.85 6.48 -2.39 -0.02 2.84 16 27 H 0.31 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.40 17.78 8.27 -92.71 -0.77 17.02 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 4.11 6.07 -2.38 -0.01 4.09 16 32 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -71.13 281.17 2.13 -69.01 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.37 Total: 18.79 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.19 Total: 6.72 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -5.41 Total: -106.69 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.06 Total: -32.99 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.13 2.13 -69.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265754111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.432 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds