Wall clock time and date at job start Sun Mar 29 2020 22:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47128 * 2 1 4 4 O 1.34278 * 126.53335 * 269.97732 * 3 2 1 5 5 C 1.34057 * 108.22738 * 180.02562 * 4 3 2 6 6 N 1.29940 * 109.26894 * 359.97438 * 5 4 3 7 7 C 1.36074 * 108.47847 * 0.02562 * 6 5 4 8 8 C 1.47324 * 126.45486 * 179.97438 * 7 6 5 9 9 O 1.21644 * 120.00274 * 173.45669 * 8 7 6 10 10 N 1.34775 * 120.00007 * 353.46114 * 8 7 6 11 11 C 1.36947 * 120.00498 * 183.32029 * 10 8 7 12 12 H 1.08006 * 119.99430 * 16.90988 * 11 10 8 13 13 C 1.38983 * 120.00622 * 196.90688 * 11 10 8 14 14 N 1.31411 * 119.99733 * 21.39914 * 13 11 10 15 15 Si 1.86794 * 120.00184 * 201.39937 * 13 11 10 16 16 H 1.48506 * 109.47339 * 60.00020 * 15 13 11 17 17 H 1.48506 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47056 * 299.99965 * 15 13 11 19 19 C 1.46508 * 119.99935 * 3.32575 * 10 8 7 20 20 C 1.52998 * 109.46968 * 86.11136 * 19 10 8 21 21 H 1.09000 * 109.47500 * 59.99210 * 1 2 3 22 22 H 1.08995 * 109.47347 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46706 * 299.99775 * 1 2 3 24 24 H 1.09002 * 109.46706 * 240.00225 * 2 1 3 25 25 H 1.08996 * 109.47467 * 120.00306 * 2 1 3 26 26 H 1.08002 * 125.36335 * 180.02562 * 5 4 3 27 27 H 0.96997 * 119.99672 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.46675 * 206.11297 * 19 10 8 29 29 H 1.08995 * 109.46772 * 326.11625 * 19 10 8 30 30 H 1.08990 * 109.47657 * 300.00060 * 20 19 10 31 31 H 1.09007 * 109.47068 * 60.00248 * 20 19 10 32 32 H 1.08999 * 109.46730 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2991 2.1743 -1.0789 5 6 2.7238 3.3741 -0.6579 6 7 2.7304 3.3949 0.6413 7 6 2.3024 2.1852 1.0943 8 6 2.1584 1.7789 2.5030 9 8 1.6521 0.7077 2.7784 10 7 2.5877 2.5941 3.4867 11 6 2.5164 2.1880 4.7926 12 1 2.3814 1.1422 5.0263 13 6 2.6177 3.1215 5.8173 14 7 2.3620 4.3884 5.5796 15 14 3.1174 2.5754 7.5323 16 1 4.4642 1.9519 7.4806 17 1 3.1520 3.7530 8.4364 18 1 2.1337 1.5871 8.0433 19 6 3.1305 3.9148 3.1590 20 6 1.9862 4.9250 3.0545 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.0138 4.1944 -1.2977 27 1 2.4324 5.0398 6.2948 28 1 3.8214 4.2280 3.9417 29 1 3.6587 3.8644 2.2069 30 1 1.2953 4.6118 2.2719 31 1 1.4579 4.9753 4.0067 32 1 2.3901 5.9076 2.8111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265790131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:10 Heat of formation + Delta-G solvation = 6.619164 kcal Electronic energy + Delta-G solvation = -17576.338944 eV Core-core repulsion = 14732.883098 eV Total energy + Delta-G solvation = -2843.455846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.83730 -38.28943 -35.16631 -34.22952 -33.52678 -31.62604 -29.20428 -28.71069 -25.43405 -23.60502 -22.83951 -21.82892 -21.05310 -19.18570 -17.09391 -16.53295 -16.15764 -15.66027 -14.75191 -14.58357 -14.00333 -13.95302 -13.53318 -12.93660 -12.65528 -12.49545 -12.21098 -11.86719 -11.42677 -11.10881 -11.03455 -10.90633 -10.76924 -10.57495 -10.32264 -10.17155 -9.97928 -9.25748 -8.85629 -8.46292 -8.30159 -7.59673 -6.25647 -3.81020 1.74473 2.75471 3.09310 3.22425 3.24358 3.28713 4.09837 4.35736 4.53475 4.92710 5.16722 5.18650 5.40124 5.57812 5.73472 5.80448 5.96501 6.14724 6.31166 6.46906 6.54911 6.58627 6.76768 6.95045 7.03849 7.25134 7.44887 7.48944 8.01005 8.10185 8.16830 8.60686 9.18875 9.44242 10.03351 10.63224 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.008340 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.879393 B = 3356.599218 C = 3949.666131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 C -0.003 4.003 4 O -0.210 6.210 5 C 0.143 3.857 6 N -0.450 5.450 7 C -0.027 4.027 8 C 0.502 3.498 9 O -0.592 6.592 10 N -0.411 5.411 11 C -0.304 4.304 12 H 0.104 0.896 13 C 0.032 3.968 14 N -0.853 5.853 15 Si 0.926 3.074 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.122 3.878 20 C -0.145 4.145 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.244 0.756 27 H 0.268 0.732 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.107 0.893 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -0.829 -9.819 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.058 4.058 4 O -0.097 6.097 5 C -0.084 4.084 6 N -0.180 5.180 7 C -0.147 4.147 8 C 0.290 3.710 9 O -0.479 6.479 10 N -0.126 5.126 11 C -0.432 4.432 12 H 0.121 0.879 13 C -0.173 4.173 14 N -0.491 5.491 15 Si 0.752 3.248 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.002 4.002 20 C -0.203 4.203 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.132 0.868 26 H 0.260 0.740 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.125 0.875 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.765 -0.618 -9.180 9.233 hybrid contribution 0.152 -0.161 0.229 0.318 sum 0.917 -0.779 -8.952 9.032 Atomic orbital electron populations 1.21678 0.93878 1.02044 1.02285 1.20142 0.96599 0.85933 1.04274 1.23567 1.03133 0.95780 0.83338 1.84255 1.64518 1.24255 1.36721 1.28030 1.01000 0.87200 0.92179 1.71151 1.16585 1.21616 1.08651 1.22075 1.05941 0.89869 0.96843 1.16484 0.85582 0.87014 0.81890 1.90582 1.50451 1.24495 1.82377 1.43718 1.49450 1.14161 1.05264 1.19744 1.48071 0.95087 0.80273 0.87863 1.25375 0.96611 0.95108 1.00158 1.70039 1.43666 1.02013 1.33364 0.86012 0.79557 0.78092 0.81153 1.19886 1.20895 1.19731 1.21584 0.96752 0.82510 0.99309 1.22261 0.99004 0.95833 1.03216 0.93354 0.91838 0.91337 0.91071 0.86793 0.73991 0.92115 0.91230 0.90869 0.96221 0.87539 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 37.16 0.37 -1.75 16 2 C -0.03 -0.52 5.87 -27.89 -0.16 -0.68 16 3 C 0.00 -0.05 6.70 -35.05 -0.23 -0.28 16 4 O -0.21 -3.42 10.73 6.44 0.07 -3.35 16 5 C 0.14 2.15 13.19 51.96 0.69 2.84 16 6 N -0.45 -8.86 6.77 -11.48 -0.08 -8.94 16 7 C -0.03 -0.59 6.62 -83.03 -0.55 -1.14 16 8 C 0.50 13.13 7.59 -12.57 -0.10 13.04 16 9 O -0.59 -16.35 14.56 5.24 0.08 -16.28 16 10 N -0.41 -11.11 2.62 -116.06 -0.30 -11.41 16 11 C -0.30 -8.54 9.32 -14.99 -0.14 -8.68 16 12 H 0.10 3.00 7.40 -52.48 -0.39 2.61 16 13 C 0.03 0.83 4.88 -17.46 -0.09 0.75 16 14 N -0.85 -22.29 8.19 55.50 0.45 -21.83 16 15 Si 0.93 20.45 29.60 -169.99 -5.03 15.41 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.12 2.99 4.88 -4.04 -0.02 2.97 16 20 C -0.15 -3.44 9.26 37.16 0.34 -3.09 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.11 2.07 6.64 -51.93 -0.34 1.73 16 26 H 0.24 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.07 1.79 6.53 -51.93 -0.34 1.45 16 29 H 0.07 1.70 5.15 -51.93 -0.27 1.43 16 30 H 0.02 0.46 7.34 -51.93 -0.38 0.07 16 31 H 0.11 2.79 5.38 -51.92 -0.28 2.51 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -31.08 267.50 -4.35 -35.43 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.67 Total: 2.98 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 0.11 Total: 3.96 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.07 Total: -42.18 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.15 Total: -19.63 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.08 -4.35 -35.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265790131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.047 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds