Wall clock time and date at job start Sun Mar 29 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47128 * 2 1 4 4 O 1.34278 * 126.53335 * 269.97732 * 3 2 1 5 5 C 1.34057 * 108.22738 * 180.02562 * 4 3 2 6 6 N 1.29940 * 109.26894 * 359.97438 * 5 4 3 7 7 C 1.36074 * 108.47847 * 0.02562 * 6 5 4 8 8 C 1.47324 * 126.45486 * 179.97438 * 7 6 5 9 9 O 1.21644 * 120.00274 * 173.45669 * 8 7 6 10 10 N 1.34775 * 120.00007 * 353.46114 * 8 7 6 11 11 C 1.36947 * 120.00498 * 183.32029 * 10 8 7 12 12 H 1.08006 * 119.99430 * 16.90988 * 11 10 8 13 13 C 1.38983 * 120.00622 * 196.90688 * 11 10 8 14 14 N 1.31411 * 119.99733 * 21.39914 * 13 11 10 15 15 Si 1.86794 * 120.00184 * 201.39937 * 13 11 10 16 16 H 1.48506 * 109.47339 * 60.00020 * 15 13 11 17 17 H 1.48506 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47056 * 299.99965 * 15 13 11 19 19 C 1.46508 * 119.99935 * 3.32575 * 10 8 7 20 20 C 1.52998 * 109.46968 * 86.11136 * 19 10 8 21 21 H 1.09000 * 109.47500 * 59.99210 * 1 2 3 22 22 H 1.08995 * 109.47347 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46706 * 299.99775 * 1 2 3 24 24 H 1.09002 * 109.46706 * 240.00225 * 2 1 3 25 25 H 1.08996 * 109.47467 * 120.00306 * 2 1 3 26 26 H 1.08002 * 125.36335 * 180.02562 * 5 4 3 27 27 H 0.96997 * 119.99672 * 179.97438 * 14 13 11 28 28 H 1.08996 * 109.46675 * 206.11297 * 19 10 8 29 29 H 1.08995 * 109.46772 * 326.11625 * 19 10 8 30 30 H 1.08990 * 109.47657 * 300.00060 * 20 19 10 31 31 H 1.09007 * 109.47068 * 60.00248 * 20 19 10 32 32 H 1.08999 * 109.46730 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2991 2.1743 -1.0789 5 6 2.7238 3.3741 -0.6579 6 7 2.7304 3.3949 0.6413 7 6 2.3024 2.1852 1.0943 8 6 2.1584 1.7789 2.5030 9 8 1.6521 0.7077 2.7784 10 7 2.5877 2.5941 3.4867 11 6 2.5164 2.1880 4.7926 12 1 2.3814 1.1422 5.0263 13 6 2.6177 3.1215 5.8173 14 7 2.3620 4.3884 5.5796 15 14 3.1174 2.5754 7.5323 16 1 4.4642 1.9519 7.4806 17 1 3.1520 3.7530 8.4364 18 1 2.1337 1.5871 8.0433 19 6 3.1305 3.9148 3.1590 20 6 1.9862 4.9250 3.0545 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.0138 4.1944 -1.2977 27 1 2.4324 5.0398 6.2948 28 1 3.8214 4.2280 3.9417 29 1 3.6587 3.8644 2.2069 30 1 1.2953 4.6118 2.2719 31 1 1.4579 4.9753 4.0067 32 1 2.3901 5.9076 2.8111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265790131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:09 Heat of formation + Delta-G solvation = -14.544147 kcal Electronic energy + Delta-G solvation = -17577.256654 eV Core-core repulsion = 14732.883098 eV Total energy + Delta-G solvation = -2844.373556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.24567 -40.23431 -37.12042 -35.71539 -34.90521 -33.62526 -31.16757 -30.15268 -27.32854 -25.09920 -24.37034 -23.70219 -22.54520 -20.79584 -18.94898 -18.31720 -17.60860 -17.37563 -16.45308 -16.14800 -15.69305 -15.56716 -15.23144 -14.61529 -14.41790 -14.24786 -13.80718 -13.46200 -13.08067 -12.85114 -12.71231 -12.56322 -12.30925 -12.14484 -12.08391 -12.03488 -11.65776 -11.09684 -10.82398 -10.41321 -9.84324 -9.56248 -8.24555 -5.91340 0.27901 1.26236 1.42018 1.49625 1.53595 1.76279 2.26740 2.47527 2.99799 3.15706 3.40911 3.78441 4.01290 4.20242 4.33266 4.44215 4.66279 4.69034 4.89598 4.96448 4.99029 5.11654 5.18041 5.24933 5.31120 5.38467 5.44562 5.56006 6.03901 6.12997 6.51802 6.74303 7.15749 7.44832 8.03091 8.63140 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033370 B = 0.008340 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.879393 B = 3356.599218 C = 3949.666131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C 0.016 3.984 4 O -0.198 6.198 5 C 0.180 3.820 6 N -0.489 5.489 7 C -0.072 4.072 8 C 0.492 3.508 9 O -0.622 6.622 10 N -0.430 5.430 11 C -0.350 4.350 12 H 0.078 0.922 13 C 0.002 3.998 14 N -0.864 5.864 15 Si 0.992 3.008 16 H -0.270 1.270 17 H -0.268 1.268 18 H -0.274 1.274 19 C 0.131 3.869 20 C -0.129 4.129 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.028 0.972 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.305 0.695 27 H 0.275 0.725 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.012 0.988 31 H 0.081 0.919 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -0.136 -11.735 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 C -0.041 4.041 4 O -0.085 6.085 5 C -0.047 4.047 6 N -0.218 5.218 7 C -0.190 4.190 8 C 0.282 3.718 9 O -0.511 6.511 10 N -0.145 5.145 11 C -0.478 4.478 12 H 0.096 0.904 13 C -0.202 4.202 14 N -0.501 5.501 15 Si 0.815 3.185 16 H -0.195 1.195 17 H -0.192 1.192 18 H -0.200 1.200 19 C 0.008 3.992 20 C -0.187 4.187 21 H 0.087 0.913 22 H 0.107 0.893 23 H 0.047 0.953 24 H 0.130 0.870 25 H 0.105 0.895 26 H 0.320 0.680 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.237 0.103 -11.092 11.161 hybrid contribution -0.017 -0.353 0.648 0.738 sum 1.220 -0.250 -10.444 10.518 Atomic orbital electron populations 1.21628 0.92901 1.03455 1.01211 1.20246 0.97334 0.84751 1.04897 1.23861 1.00842 0.96394 0.83028 1.84320 1.64312 1.24521 1.35339 1.29316 0.96770 0.87323 0.91311 1.70952 1.18722 1.21028 1.11126 1.21578 1.09898 0.92140 0.95400 1.17132 0.84494 0.86470 0.83722 1.90529 1.51404 1.25590 1.83609 1.43927 1.50279 1.15119 1.05197 1.19702 1.51671 0.94555 0.81848 0.90404 1.26146 0.95543 0.95128 1.03365 1.70139 1.42785 1.02550 1.34629 0.85034 0.78931 0.78007 0.76529 1.19518 1.19204 1.19970 1.21565 0.96639 0.81763 0.99245 1.22047 0.98387 0.96759 1.01476 0.91342 0.89302 0.95291 0.87006 0.89503 0.67990 0.91511 0.93045 0.89309 0.96868 0.90082 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.89 71.98 0.71 -3.15 16 2 C -0.03 -1.09 5.87 29.85 0.18 -0.91 16 3 C 0.02 0.56 6.70 25.21 0.17 0.73 16 4 O -0.20 -5.69 10.73 0.12 0.00 -5.69 16 5 C 0.18 4.68 13.19 130.52 1.72 6.40 16 6 N -0.49 -18.43 6.77 -305.15 -2.06 -20.49 16 7 C -0.07 -3.17 6.62 40.40 0.27 -2.90 16 8 C 0.49 26.84 7.59 86.63 0.66 27.50 16 9 O -0.62 -36.33 14.56 -4.17 -0.06 -36.40 16 10 N -0.43 -24.22 2.62 -639.34 -1.68 -25.90 16 11 C -0.35 -20.65 9.32 84.07 0.78 -19.87 16 12 H 0.08 4.84 7.40 -2.91 -0.02 4.82 16 13 C 0.00 0.09 4.88 84.93 0.41 0.50 16 14 N -0.86 -45.82 8.19 21.67 0.18 -45.64 16 15 Si 0.99 42.63 29.60 68.60 2.03 44.66 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 C 0.13 6.53 4.88 86.38 0.42 6.95 16 20 C -0.13 -6.12 9.26 71.98 0.67 -5.46 16 21 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.09 3.22 6.64 -2.39 -0.02 3.20 16 26 H 0.31 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.05 2.70 6.53 -2.39 -0.02 2.68 16 29 H 0.09 4.13 5.15 -2.39 -0.01 4.12 16 30 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 31 H 0.08 4.33 5.38 -2.38 -0.01 4.31 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.69 267.50 5.53 -66.17 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.13 Total: 13.50 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.99 Total: 9.79 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.57 Total: -92.03 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.06 Total: -42.08 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.69 5.53 -66.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265790131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.621 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds