Wall clock time and date at job start Sun Mar 29 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47545 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47425 * 300.00442 * 3 2 1 6 6 H 1.48507 * 109.47067 * 60.00374 * 3 2 1 7 7 C 1.37878 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47248 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47117 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00136 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99949 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00069 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99928 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46916 * 179.97438 * 15 14 12 17 17 C 1.41381 * 126.57424 * 90.00122 * 16 15 14 18 18 C 1.34520 * 106.83580 * 179.72986 * 17 16 15 19 19 O 1.34302 * 108.42210 * 0.26485 * 18 17 16 20 20 C 1.34302 * 109.47622 * 359.97438 * 19 18 17 21 21 H 0.96997 * 120.00164 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46793 * 59.99997 * 9 7 2 23 23 H 1.09006 * 109.46659 * 300.00524 * 9 7 2 24 24 H 1.09000 * 109.47080 * 60.00135 * 10 9 7 25 25 H 1.09004 * 109.46804 * 300.00139 * 10 9 7 26 26 H 0.97000 * 119.99607 * 359.97438 * 11 10 9 27 27 H 0.96992 * 120.00059 * 359.97438 * 14 12 11 28 28 H 1.09007 * 109.47170 * 59.99754 * 15 14 12 29 29 H 1.08999 * 109.46799 * 299.99624 * 15 14 12 30 30 H 1.08002 * 126.58570 * 359.97438 * 17 16 15 31 31 H 1.08004 * 125.78733 * 180.22473 * 18 17 16 32 32 H 1.07999 * 125.79201 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9309 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4025 -6.0981 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2453 -8.5340 -0.0009 16 6 1.2659 -9.6794 -0.0003 17 6 0.7180 -10.3199 -1.1354 18 6 -0.1000 -11.2861 -0.6806 19 8 -0.0811 -11.2610 0.6621 20 6 0.7431 -10.2865 1.0802 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6043 -0.8905 26 1 0.5428 -4.9308 -0.0011 27 1 0.5428 -7.2652 -0.0007 28 1 2.8720 -8.5918 0.8891 29 1 2.8718 -8.5916 -0.8910 30 1 0.9206 -10.0820 -2.1692 31 1 -0.6750 -11.9662 -1.2916 32 1 0.9534 -10.0354 2.1093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273014671.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:37 Heat of formation + Delta-G solvation = -26.013935 kcal Electronic energy + Delta-G solvation = -15740.738115 eV Core-core repulsion = 12895.867192 eV Total energy + Delta-G solvation = -2844.870923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.84652 -39.48518 -35.62710 -34.59890 -32.98845 -32.57732 -30.19477 -29.31986 -26.35289 -24.36490 -21.87540 -21.10176 -20.68321 -20.50540 -18.35332 -17.39108 -16.42341 -16.21618 -15.62431 -15.33946 -14.92518 -14.48878 -13.95668 -13.89517 -13.55880 -13.08314 -12.99319 -12.35627 -12.25191 -11.98075 -11.15600 -11.03028 -10.59862 -10.30039 -10.24953 -9.84971 -9.53352 -9.22920 -8.99241 -8.87284 -8.46721 -8.21233 -6.07613 -4.10018 1.44378 2.17335 2.84595 3.29850 3.30516 3.37735 3.43667 3.62756 4.42032 4.49399 4.57195 4.76283 4.82010 5.29606 5.30903 5.39032 5.61812 5.80160 5.91838 6.17250 6.32885 6.42848 6.62091 6.80584 6.80703 7.03673 7.28691 7.59720 7.65788 7.92000 8.28326 8.47300 8.95270 9.03324 9.54698 11.04152 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062676 B = 0.003459 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.634973 B = 8093.230824 C = 8338.273544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.750 5.750 15 C 0.211 3.789 16 C -0.199 4.199 17 C -0.198 4.198 18 C -0.045 4.045 19 O -0.177 6.177 20 C -0.017 4.017 21 H 0.261 0.739 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.393 0.607 27 H 0.395 0.605 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.203 0.797 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -21.231 -0.163 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.398 3.602 13 O -0.478 6.478 14 N -0.408 5.408 15 C 0.087 3.913 16 C -0.201 4.201 17 C -0.218 4.218 18 C -0.113 4.113 19 O -0.072 6.072 20 C -0.086 4.086 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.226 0.774 27 H 0.228 0.772 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.168 0.832 31 H 0.219 0.781 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.408 -21.270 0.018 21.316 hybrid contribution -0.492 1.035 -0.213 1.166 sum -1.900 -20.234 -0.196 20.324 Atomic orbital electron populations 1.69967 1.06091 1.26722 1.50604 1.25001 0.94897 0.99423 0.95047 0.86454 0.80194 0.83327 0.77578 1.19554 1.20959 1.20965 1.21102 0.93323 0.90357 1.51037 0.92149 1.19335 0.94275 0.91113 0.97807 1.21589 0.95629 0.80414 1.00647 1.45534 1.09848 1.05308 1.78518 1.16068 0.85626 0.80469 0.78063 1.90889 1.11767 1.86693 1.58500 1.45202 1.09524 1.04316 1.81728 1.19256 0.91045 0.78240 1.02775 1.20549 1.04437 1.02019 0.93109 1.21815 1.01096 0.98711 1.00157 1.24048 1.03785 1.02671 0.80747 1.84094 1.53525 1.46695 1.22910 1.24043 0.94149 0.90431 0.99992 0.92937 0.95965 0.95975 0.92779 0.92792 0.77396 0.77186 0.91012 0.90891 0.83237 0.78069 0.77846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.38 5.56 -65.22 -0.36 -13.74 16 12 C 0.70 12.52 8.57 -86.92 -0.74 11.78 16 13 O -0.60 -13.15 16.34 5.29 0.09 -13.07 16 14 N -0.75 -9.92 5.55 -66.41 -0.37 -10.29 16 15 C 0.21 2.47 6.19 -5.19 -0.03 2.44 16 16 C -0.20 -1.93 5.53 -104.74 -0.58 -2.51 16 17 C -0.20 -1.75 10.87 -39.70 -0.43 -2.18 16 18 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 19 O -0.18 -1.59 10.65 5.71 0.06 -1.53 16 20 C -0.02 -0.15 12.01 29.42 0.35 0.21 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 27 H 0.39 4.33 8.48 -40.82 -0.35 3.99 16 28 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.20 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 288.81 15.07 4.35 4.35 Total: -1.00 -33.48 288.81 -6.21 -39.69 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.04 Total: 4.02 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.65 Total: -0.37 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.00 Total: -49.58 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.15 Total: -14.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.48 -6.21 -39.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273014671.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.677 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds