Wall clock time and date at job start Sun Mar 29 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99963 * 2 1 4 4 H 1.48499 * 109.47545 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47425 * 300.00442 * 3 2 1 6 6 H 1.48507 * 109.47067 * 60.00374 * 3 2 1 7 7 C 1.37878 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47248 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47117 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00136 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99949 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00069 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99928 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46916 * 179.97438 * 15 14 12 17 17 C 1.41381 * 126.57424 * 90.00122 * 16 15 14 18 18 C 1.34520 * 106.83580 * 179.72986 * 17 16 15 19 19 O 1.34302 * 108.42210 * 0.26485 * 18 17 16 20 20 C 1.34302 * 109.47622 * 359.97438 * 19 18 17 21 21 H 0.96997 * 120.00164 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46793 * 59.99997 * 9 7 2 23 23 H 1.09006 * 109.46659 * 300.00524 * 9 7 2 24 24 H 1.09000 * 109.47080 * 60.00135 * 10 9 7 25 25 H 1.09004 * 109.46804 * 300.00139 * 10 9 7 26 26 H 0.97000 * 119.99607 * 359.97438 * 11 10 9 27 27 H 0.96992 * 120.00059 * 359.97438 * 14 12 11 28 28 H 1.09007 * 109.47170 * 59.99754 * 15 14 12 29 29 H 1.08999 * 109.46799 * 299.99624 * 15 14 12 30 30 H 1.08002 * 126.58570 * 359.97438 * 17 16 15 31 31 H 1.08004 * 125.78733 * 180.22473 * 18 17 16 32 32 H 1.07999 * 125.79201 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9309 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4025 -6.0981 -0.0003 14 7 1.5127 -7.2652 -0.0008 15 6 2.2453 -8.5340 -0.0009 16 6 1.2659 -9.6794 -0.0003 17 6 0.7180 -10.3199 -1.1354 18 6 -0.1000 -11.2861 -0.6806 19 8 -0.0811 -11.2610 0.6621 20 6 0.7431 -10.2865 1.0802 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8895 25 1 2.8719 -3.6043 -0.8905 26 1 0.5428 -4.9308 -0.0011 27 1 0.5428 -7.2652 -0.0007 28 1 2.8720 -8.5918 0.8891 29 1 2.8718 -8.5916 -0.8910 30 1 0.9206 -10.0820 -2.1692 31 1 -0.6750 -11.9662 -1.2916 32 1 0.9534 -10.0354 2.1093 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273014671.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:37 Heat of formation + Delta-G solvation = -50.469665 kcal Electronic energy + Delta-G solvation = -15741.798595 eV Core-core repulsion = 12895.867192 eV Total energy + Delta-G solvation = -2845.931403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.50187 -40.93442 -36.94470 -36.14639 -34.82082 -33.68886 -31.54997 -30.52546 -27.58081 -26.14657 -22.95098 -22.49781 -21.97491 -21.45769 -19.57167 -18.44167 -18.29271 -17.19566 -16.75880 -16.73820 -16.47502 -15.64722 -15.34719 -15.22058 -15.05568 -14.38635 -14.26652 -13.68671 -13.23775 -13.16808 -12.98767 -12.81360 -12.50123 -12.22429 -11.69053 -11.52601 -11.28256 -10.74792 -10.60311 -10.35270 -9.71491 -9.51989 -8.23273 -6.33391 0.78475 1.39875 1.42100 1.43661 1.56548 2.06276 2.16761 2.28298 2.43201 3.11637 3.46935 3.76669 3.92229 4.13633 4.47946 4.53353 4.59156 4.69118 4.73560 4.88065 5.11439 5.26194 5.32108 5.45077 5.51389 5.54015 5.60634 5.80092 6.05039 6.16651 6.18381 6.80110 7.12836 7.35995 7.59637 8.88924 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062676 B = 0.003459 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.634973 B = 8093.230824 C = 8338.273544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.729 5.729 15 C 0.214 3.786 16 C -0.216 4.216 17 C -0.219 4.219 18 C -0.037 4.037 19 O -0.185 6.185 20 C -0.012 4.012 21 H 0.266 0.734 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.407 0.593 27 H 0.409 0.591 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.236 0.764 32 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -21.969 -0.080 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.386 5.386 15 C 0.090 3.910 16 C -0.217 4.217 17 C -0.238 4.238 18 C -0.103 4.103 19 O -0.080 6.080 20 C -0.081 4.081 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.242 0.758 27 H 0.244 0.756 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.253 0.747 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.840 -22.056 0.100 22.133 hybrid contribution -0.417 1.169 -0.249 1.266 sum -2.257 -20.887 -0.149 21.009 Atomic orbital electron populations 1.70065 1.07535 1.27925 1.51140 1.25875 0.95808 1.03107 0.94436 0.85382 0.78978 0.78717 0.77877 1.18950 1.20230 1.20216 1.21503 0.93629 0.91898 1.51356 0.92273 1.19137 0.94242 0.91673 0.96361 1.21081 0.94624 0.81080 0.99643 1.45225 1.10377 1.04433 1.78766 1.16161 0.85123 0.81217 0.77752 1.90861 1.13699 1.87352 1.60346 1.45070 1.10202 1.03425 1.79904 1.19251 0.91466 0.78027 1.02242 1.20404 1.05088 1.02013 0.94244 1.22000 1.01934 0.99515 1.00338 1.24690 1.03001 1.02325 0.80329 1.84122 1.53495 1.46700 1.23702 1.24445 0.93251 0.89710 1.00719 0.92555 0.97318 0.97264 0.93741 0.93856 0.75816 0.75562 0.91130 0.91907 0.82719 0.74746 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.02 1.19 5.09 29.85 0.15 1.35 16 10 C 0.16 7.08 5.61 86.38 0.48 7.56 16 11 N -0.73 -26.36 5.56 -478.53 -2.66 -29.02 16 12 C 0.70 24.76 8.57 179.06 1.53 26.29 16 13 O -0.64 -28.23 16.34 -3.99 -0.07 -28.29 16 14 N -0.73 -18.55 5.55 -482.29 -2.68 -21.22 16 15 C 0.21 4.85 6.19 85.63 0.53 5.38 16 16 C -0.22 -3.88 5.53 -19.94 -0.11 -3.99 16 17 C -0.22 -3.49 10.87 22.19 0.24 -3.25 16 18 C -0.04 -0.47 12.09 66.97 0.81 0.34 16 19 O -0.19 -2.89 10.65 -2.47 -0.03 -2.92 16 20 C -0.01 -0.19 12.01 66.97 0.80 0.62 16 21 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 22 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 23 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 24 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.41 12.41 8.49 -92.71 -0.79 11.62 16 27 H 0.41 8.31 8.48 -92.71 -0.79 7.53 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.07 288.81 1.59 -69.48 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.43 Total: 15.73 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.14 Total: 4.62 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -5.05 Total: -104.48 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.09 Total: -31.21 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.07 1.59 -69.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273014671.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.014 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds