Wall clock time and date at job start Sun Mar 29 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 O 1.34261 * 126.52235 * 269.97627 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46762 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99539 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00476 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99670 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00385 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47224 * 59.99455 * 17 15 13 19 19 H 1.48500 * 109.47410 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46732 * 300.00143 * 17 15 13 21 21 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47189 * 300.00300 * 1 2 3 23 23 H 1.08998 * 109.46877 * 59.99613 * 1 2 3 24 24 H 1.09000 * 109.46754 * 239.99864 * 2 1 3 25 25 H 1.09003 * 109.46981 * 119.99654 * 2 1 3 26 26 H 1.08002 * 125.38061 * 180.02562 * 5 4 3 27 27 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 28 28 H 1.09004 * 109.46769 * 299.99722 * 11 10 8 29 29 H 1.09000 * 109.47350 * 59.99852 * 11 10 8 30 30 H 1.08996 * 109.47362 * 299.99677 * 12 11 10 31 31 H 1.09000 * 109.47356 * 59.99798 * 12 11 10 32 32 H 0.97000 * 119.99895 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1739 -1.0790 5 6 2.7228 3.3741 -0.6582 6 7 2.7286 3.3948 0.6410 7 6 2.3011 2.1850 1.0936 8 6 2.1566 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4613 2.6450 3.4893 11 6 2.3181 2.2407 4.8900 12 6 2.7257 3.4012 5.8000 13 6 2.5778 2.9855 7.2410 14 1 2.2286 1.9927 7.4835 15 6 2.8895 3.8722 8.2498 16 7 3.3153 5.0810 7.9544 17 14 2.7069 3.3567 10.0359 18 1 3.5799 2.1860 10.3049 19 1 3.1023 4.4831 10.9191 20 1 1.2926 2.9914 10.3035 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0126 4.1946 -1.2979 27 1 2.7754 3.5365 3.2714 28 1 1.2800 1.9726 5.0865 29 1 2.9589 1.3813 5.0875 30 1 3.7636 3.6697 5.6036 31 1 2.0846 4.2603 5.6024 32 1 3.5348 5.7047 8.6641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273056040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:15 Heat of formation + Delta-G solvation = -34.577805 kcal Electronic energy + Delta-G solvation = -16283.735676 eV Core-core repulsion = 13438.493396 eV Total energy + Delta-G solvation = -2845.242280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.48840 -39.04694 -35.06992 -34.82885 -34.08266 -32.77200 -29.94976 -29.02975 -25.43160 -24.05416 -23.44985 -21.66118 -20.76963 -20.19189 -18.00195 -16.89167 -16.45242 -15.97145 -15.46961 -14.79352 -14.75752 -14.62354 -14.39343 -13.56030 -13.17421 -13.06942 -12.71263 -12.27019 -11.86540 -11.39342 -11.33450 -11.19151 -10.99524 -10.75738 -10.64140 -10.30102 -9.93202 -9.51398 -9.23694 -9.01736 -8.50434 -8.31731 -6.06133 -4.09376 1.09733 2.07826 2.48328 3.33104 3.36864 3.39405 3.56360 3.57937 4.06257 4.44048 4.51981 4.86720 5.02787 5.11439 5.22025 5.30579 5.43734 5.69093 5.71564 5.97367 6.07270 6.08378 6.35399 6.35512 6.74503 6.90505 7.38351 7.56169 7.65233 7.91580 8.04509 8.29549 8.59215 8.96295 9.55141 11.05458 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044521 B = 0.004538 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.761270 B = 6168.394085 C = 6694.917604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.037 3.963 4 O -0.203 6.203 5 C 0.168 3.832 6 N -0.460 5.460 7 C -0.067 4.067 8 C 0.590 3.410 9 O -0.545 6.545 10 N -0.702 5.702 11 C 0.121 3.879 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.254 0.746 27 H 0.406 0.594 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -5.328 -18.712 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.020 4.020 4 O -0.089 6.089 5 C -0.060 4.060 6 N -0.189 5.189 7 C -0.187 4.187 8 C 0.375 3.625 9 O -0.424 6.424 10 N -0.350 5.350 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.136 0.864 26 H 0.270 0.730 27 H 0.241 0.759 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.469 -5.428 -18.022 18.983 hybrid contribution 0.051 0.091 0.363 0.378 sum -2.418 -5.337 -17.659 18.605 Atomic orbital electron populations 1.21703 0.93166 1.02811 1.02462 1.20366 0.97060 0.85436 1.05308 1.23798 0.99202 0.95624 0.83336 1.84349 1.63914 1.24236 1.36399 1.27998 0.99631 0.87065 0.91329 1.70775 1.16750 1.21335 1.10064 1.21732 1.09703 0.91201 0.96103 1.16776 0.78328 0.84918 0.82491 1.90745 1.48146 1.20229 1.83251 1.46184 1.64897 1.16757 1.07188 1.21804 1.00858 1.00192 0.77213 1.19328 0.97337 0.92378 0.93507 1.21004 1.45118 0.99581 0.90394 0.92268 1.24996 0.94976 0.94867 0.99415 1.69956 1.44685 1.05616 1.32975 0.86566 0.78667 0.78061 0.84190 1.20116 1.21250 1.20121 0.91123 0.91596 0.92790 0.89991 0.86363 0.73047 0.75884 0.92277 0.92272 0.95831 0.95833 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.04 -0.49 5.93 -27.89 -0.17 -0.65 16 3 C 0.04 0.49 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -2.30 10.73 6.51 0.07 -2.23 16 5 C 0.17 1.72 13.19 51.96 0.69 2.41 16 6 N -0.46 -6.63 11.06 -11.49 -0.13 -6.76 16 7 C -0.07 -1.07 6.99 -83.03 -0.58 -1.65 16 8 C 0.59 10.99 7.81 -12.52 -0.10 10.89 16 9 O -0.54 -10.92 14.80 5.27 0.08 -10.84 16 10 N -0.70 -13.62 5.55 -61.38 -0.34 -13.96 16 11 C 0.12 2.66 5.61 -4.04 -0.02 2.64 16 12 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.12 1.49 6.48 -51.93 -0.34 1.15 16 26 H 0.25 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.41 7.52 8.20 -40.82 -0.33 7.19 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -32.47 286.00 -4.91 -37.38 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.02 Total: 1.77 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.60 Total: -0.44 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.27 Total: -46.49 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.15 Total: -13.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.47 -4.91 -37.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273056040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.804 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds