Wall clock time and date at job start Sun Mar 29 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47395 * 2 1 4 4 O 1.34261 * 126.52235 * 269.97627 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36059 * 108.48127 * 0.02562 * 6 5 4 8 8 C 1.47419 * 126.45311 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00120 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99976 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46762 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99539 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00476 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99670 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00385 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47224 * 59.99455 * 17 15 13 19 19 H 1.48500 * 109.47410 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46732 * 300.00143 * 17 15 13 21 21 H 1.08995 * 109.47472 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47189 * 300.00300 * 1 2 3 23 23 H 1.08998 * 109.46877 * 59.99613 * 1 2 3 24 24 H 1.09000 * 109.46754 * 239.99864 * 2 1 3 25 25 H 1.09003 * 109.46981 * 119.99654 * 2 1 3 26 26 H 1.08002 * 125.38061 * 180.02562 * 5 4 3 27 27 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 28 28 H 1.09004 * 109.46769 * 299.99722 * 11 10 8 29 29 H 1.09000 * 109.47350 * 59.99852 * 11 10 8 30 30 H 1.08996 * 109.47362 * 299.99677 * 12 11 10 31 31 H 1.09000 * 109.47356 * 59.99798 * 12 11 10 32 32 H 0.97000 * 119.99895 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1739 -1.0790 5 6 2.7228 3.3741 -0.6582 6 7 2.7286 3.3948 0.6410 7 6 2.3011 2.1850 1.0936 8 6 2.1566 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4613 2.6450 3.4893 11 6 2.3181 2.2407 4.8900 12 6 2.7257 3.4012 5.8000 13 6 2.5778 2.9855 7.2410 14 1 2.2286 1.9927 7.4835 15 6 2.8895 3.8722 8.2498 16 7 3.3153 5.0810 7.9544 17 14 2.7069 3.3567 10.0359 18 1 3.5799 2.1860 10.3049 19 1 3.1023 4.4831 10.9191 20 1 1.2926 2.9914 10.3035 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.0126 4.1946 -1.2979 27 1 2.7754 3.5365 3.2714 28 1 1.2800 1.9726 5.0865 29 1 2.9589 1.3813 5.0875 30 1 3.7636 3.6697 5.6036 31 1 2.0846 4.2603 5.6024 32 1 3.5348 5.7047 8.6641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273056040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:15 Heat of formation + Delta-G solvation = -59.672566 kcal Electronic energy + Delta-G solvation = -16284.823867 eV Core-core repulsion = 13438.493396 eV Total energy + Delta-G solvation = -2846.330471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.46018 -40.54412 -36.72709 -35.90415 -35.12459 -34.72786 -31.72598 -30.20056 -27.17330 -25.32321 -24.52432 -23.11125 -22.28423 -21.46745 -19.25903 -18.49089 -17.87255 -17.18428 -16.82081 -16.44425 -16.40818 -15.86770 -15.53621 -14.85504 -14.71101 -14.45672 -14.26108 -13.56630 -13.25402 -12.94289 -12.68492 -12.55004 -12.46519 -12.25471 -12.18362 -11.78973 -11.68600 -11.49433 -11.06883 -10.61003 -10.21204 -9.88009 -8.23905 -6.35577 0.03420 1.06303 1.42049 1.45177 1.52906 1.55737 2.17192 2.22089 2.43870 3.10597 3.12658 3.55538 3.78520 4.08785 4.23784 4.28973 4.45516 4.45764 4.55908 4.77752 4.81323 4.94042 5.11101 5.16685 5.23672 5.28780 5.45079 5.54021 5.76332 6.13397 6.32743 6.62089 6.77439 7.09011 7.33946 8.88172 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044521 B = 0.004538 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.761270 B = 6168.394085 C = 6694.917604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C 0.051 3.949 4 O -0.194 6.194 5 C 0.198 3.802 6 N -0.502 5.502 7 C -0.104 4.104 8 C 0.589 3.411 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.141 3.859 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.089 0.911 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.099 0.901 26 H 0.308 0.692 27 H 0.410 0.590 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.005 0.995 31 H 0.005 0.995 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -5.836 -20.107 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.007 4.007 4 O -0.081 6.081 5 C -0.030 4.030 6 N -0.230 5.230 7 C -0.222 4.222 8 C 0.376 3.624 9 O -0.445 6.445 10 N -0.355 5.355 11 C 0.018 3.982 12 C -0.015 4.015 13 C -0.586 4.586 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.108 0.892 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.133 0.867 25 H 0.117 0.883 26 H 0.323 0.677 27 H 0.245 0.755 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.645 -5.940 -19.428 20.488 hybrid contribution 0.120 0.289 0.653 0.724 sum -2.525 -5.652 -18.775 19.769 Atomic orbital electron populations 1.21680 0.92422 1.03894 1.01690 1.20465 0.97577 0.84348 1.05936 1.24078 0.97433 0.96150 0.83020 1.84405 1.63765 1.24520 1.35386 1.29211 0.95977 0.87198 0.90633 1.70727 1.18870 1.21165 1.12267 1.21348 1.13005 0.92955 0.94916 1.17143 0.77273 0.84336 0.83631 1.90719 1.48876 1.20941 1.83993 1.46032 1.65797 1.17270 1.06366 1.21334 1.00146 0.98352 0.78329 1.19134 0.95742 0.92914 0.93749 1.21427 1.45393 0.99991 0.91765 0.91882 1.25928 0.94329 0.94748 1.04275 1.70077 1.45390 1.06743 1.34583 0.85439 0.79063 0.77947 0.78238 1.19175 1.20617 1.19191 0.89190 0.94474 0.91332 0.86707 0.88324 0.67746 0.75493 0.92800 0.92760 0.97659 0.97675 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.05 -0.94 5.93 29.85 0.18 -0.76 16 3 C 0.05 1.26 6.69 25.19 0.17 1.43 16 4 O -0.19 -3.81 10.73 0.37 0.00 -3.81 16 5 C 0.20 3.44 13.19 130.52 1.72 5.16 16 6 N -0.50 -13.87 11.06 -305.16 -3.37 -17.25 16 7 C -0.10 -3.26 6.99 40.41 0.28 -2.98 16 8 C 0.59 22.48 7.81 86.66 0.68 23.15 16 9 O -0.56 -23.23 14.80 -4.06 -0.06 -23.29 16 10 N -0.71 -28.35 5.55 -466.37 -2.59 -30.94 16 11 C 0.14 6.42 5.61 86.38 0.48 6.91 16 12 C 0.02 1.17 5.09 29.85 0.15 1.32 16 13 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 15 C 0.01 0.34 5.46 84.65 0.46 0.80 16 16 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 17 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.10 2.46 6.48 -2.39 -0.02 2.44 16 26 H 0.31 1.28 8.06 -2.91 -0.02 1.26 16 27 H 0.41 15.79 8.20 -92.71 -0.76 15.03 16 28 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -71.37 286.00 1.74 -69.64 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.37 Total: 12.94 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.07 Total: 2.09 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -5.68 Total: -103.72 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -71.37 1.74 -69.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273056040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.965 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds