Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47201 * 274.98558 * 3 2 1 5 5 H 1.48505 * 109.47020 * 34.98536 * 3 2 1 6 6 H 1.48500 * 109.47186 * 154.98379 * 3 2 1 7 7 C 1.40044 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 173.86906 * 7 2 1 9 9 C 1.46382 * 119.99974 * 354.14834 * 7 2 1 10 10 O 1.21690 * 119.99902 * 5.75375 * 9 7 2 11 11 N 1.34776 * 119.99953 * 185.75589 * 9 7 2 12 12 C 1.46499 * 119.99860 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.85771 * 34.29391 * 12 11 9 14 14 C 1.54629 * 110.96906 * 270.50777 * 12 11 9 15 15 C 1.51336 * 104.16775 * 217.10931 * 14 12 11 16 16 O 1.21278 * 124.93026 * 196.25138 * 15 14 12 17 17 N 1.34423 * 110.12899 * 16.20000 * 15 14 12 18 18 C 1.46505 * 124.34935 * 180.46016 * 17 15 14 19 19 C 1.52997 * 117.49675 * 8.59488 * 18 17 15 20 20 C 1.52997 * 60.00114 * 252.51245 * 19 18 17 21 21 C 1.46761 * 111.30262 * 0.44041 * 17 15 14 22 22 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99702 * 359.97438 * 11 9 7 24 24 H 1.09002 * 110.48628 * 335.76476 * 14 12 11 25 25 H 1.09003 * 110.48480 * 98.40433 * 14 12 11 26 26 H 1.08996 * 115.55242 * 154.30913 * 18 17 15 27 27 H 1.08996 * 117.50081 * 0.02562 * 19 18 17 28 28 H 1.09010 * 117.49434 * 145.02186 * 19 18 17 29 29 H 1.08998 * 117.49682 * 252.51210 * 20 19 18 30 30 H 1.08999 * 117.51138 * 107.48878 * 20 19 18 31 31 H 1.08997 * 110.24683 * 223.98445 * 21 17 15 32 32 H 1.09001 * 110.31905 * 102.01920 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4947 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 -0.0993 9 6 1.2808 -2.4772 0.1304 10 8 0.0639 -2.4825 0.1324 11 7 1.9600 -3.6354 0.2476 12 6 1.2332 -4.9008 0.3770 13 1 0.3095 -4.8787 -0.2014 14 6 0.9488 -5.2263 1.8616 15 6 1.1101 -6.7285 1.9489 16 8 0.7073 -7.4183 2.8615 17 7 1.7637 -7.1872 0.8676 18 6 2.0789 -8.5979 0.6289 19 6 1.4614 -9.6296 1.5750 20 6 2.9552 -9.3103 1.6612 21 6 2.1205 -6.0934 -0.0436 22 1 -0.4850 0.8401 0.0004 23 1 2.9299 -3.6311 0.2456 24 1 1.6716 -4.7270 2.5069 25 1 -0.0672 -4.9349 2.1282 26 1 2.2004 -8.8822 -0.4163 27 1 0.8202 -9.2588 2.3747 28 1 1.1761 -10.5930 1.1521 29 1 3.6527 -10.0637 1.2950 30 1 3.2973 -8.7295 2.5177 31 1 1.9079 -6.3766 -1.0744 32 1 3.1741 -5.8371 0.0671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274662594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = -37.928096 kcal Electronic energy + Delta-G solvation = -16703.008302 eV Core-core repulsion = 13857.620742 eV Total energy + Delta-G solvation = -2845.387560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50888 -37.63007 -36.55511 -35.76728 -32.87785 -32.18189 -29.48974 -27.30660 -25.98438 -22.91043 -22.48176 -21.56285 -19.75909 -18.96584 -17.44027 -16.85521 -16.14737 -15.39148 -15.32291 -14.61127 -14.15003 -13.86410 -13.63800 -13.47480 -13.08438 -12.69369 -12.40282 -12.27316 -11.55863 -11.32772 -11.16320 -11.13433 -10.97704 -10.73508 -10.55467 -10.47471 -10.28428 -9.40886 -8.91273 -8.47565 -7.75535 -7.70207 -6.27556 -4.72601 2.69364 2.91141 3.09908 3.17924 3.21357 3.81106 4.03345 4.41605 4.46818 4.70237 4.77387 4.80881 4.94261 5.07738 5.26978 5.44596 5.47394 5.60323 5.65330 5.77132 5.85495 5.94844 6.23652 6.31021 6.41890 6.72565 7.18098 7.36585 7.76838 7.92536 8.22502 8.31626 8.94862 9.37897 10.49722 10.67535 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060839 B = 0.004924 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.118993 B = 5684.758255 C = 5838.065408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.755 5.755 12 C 0.151 3.849 13 H 0.100 0.900 14 C -0.167 4.167 15 C 0.523 3.477 16 O -0.537 6.537 17 N -0.593 5.593 18 C 0.081 3.919 19 C -0.192 4.192 20 C -0.193 4.193 21 C 0.100 3.900 22 H 0.269 0.731 23 H 0.383 0.617 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 -12.291 -0.620 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.459 6.459 11 N -0.410 5.410 12 C 0.043 3.957 13 H 0.118 0.882 14 C -0.209 4.209 15 C 0.312 3.688 16 O -0.415 6.415 17 N -0.326 5.326 18 C -0.023 4.023 19 C -0.229 4.229 20 C -0.231 4.231 21 C -0.023 4.023 22 H 0.080 0.920 23 H 0.216 0.784 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.487 -12.575 -0.180 13.721 hybrid contribution 1.062 0.761 -0.070 1.309 sum 6.550 -11.814 -0.250 13.510 Atomic orbital electron populations 1.70014 1.07105 1.27457 1.34792 1.25700 0.94605 1.00355 0.92554 0.86352 0.80283 0.81423 0.78694 1.19814 1.20372 1.18820 1.20856 0.94126 0.89381 1.53794 0.91265 1.18270 0.87212 0.82229 0.76370 1.90618 1.14009 1.86130 1.55134 1.46178 1.08524 1.04728 1.81618 1.21291 0.96340 0.84456 0.93594 0.88234 1.22946 1.05806 0.91506 1.00628 1.21210 0.75843 0.91039 0.80669 1.90552 1.51216 1.63555 1.36128 1.47676 1.56759 1.05494 1.22661 1.21496 1.05081 0.79296 0.96383 1.23742 0.96966 0.98636 1.03552 1.23333 0.94146 1.03542 1.02122 1.22405 0.99789 0.86284 0.93854 0.91986 0.78426 0.87632 0.87746 0.85487 0.85071 0.88709 0.88402 0.88803 0.89998 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.21 11.85 55.55 0.66 -21.55 16 2 C 0.09 2.36 5.49 -17.37 -0.10 2.27 16 3 Si 0.91 19.41 29.56 -169.99 -5.03 14.38 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.54 -14.58 9.53 -35.63 -0.34 -14.92 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 C 0.55 14.72 7.74 -12.98 -0.10 14.62 16 10 O -0.58 -17.65 14.73 5.20 0.08 -17.57 16 11 N -0.76 -15.09 5.16 -53.63 -0.28 -15.36 16 12 C 0.15 2.61 3.48 -66.30 -0.23 2.38 16 13 H 0.10 1.93 7.63 -51.93 -0.40 1.54 16 14 C -0.17 -2.88 6.60 -26.71 -0.18 -3.06 16 15 C 0.52 8.76 7.88 -10.83 -0.09 8.67 16 16 O -0.54 -10.22 14.69 5.56 0.08 -10.14 16 17 N -0.59 -8.26 3.27 -164.82 -0.54 -8.80 16 18 C 0.08 0.95 6.88 -67.93 -0.47 0.48 16 19 C -0.19 -2.30 9.77 -26.73 -0.26 -2.56 16 20 C -0.19 -2.12 10.34 -26.73 -0.28 -2.40 16 21 C 0.10 1.30 7.07 -3.12 -0.02 1.28 16 22 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 23 H 0.38 6.56 8.37 -40.82 -0.34 6.22 16 24 H 0.11 1.81 8.08 -51.93 -0.42 1.39 16 25 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 26 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.13 1.99 5.30 -51.93 -0.28 1.71 16 28 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.86 7.78 -51.93 -0.40 0.46 16 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -33.33 277.54 -6.82 -40.15 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.92 Total: 7.96 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.05 Total: 6.76 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.16 Total: -45.71 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: 0.16 Total: -27.72 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.33 -6.82 -40.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.220 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds