Wall clock time and date at job start Sun Mar 29 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47201 * 274.98558 * 3 2 1 5 5 H 1.48505 * 109.47020 * 34.98536 * 3 2 1 6 6 H 1.48500 * 109.47186 * 154.98379 * 3 2 1 7 7 C 1.40044 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 173.86906 * 7 2 1 9 9 C 1.46382 * 119.99974 * 354.14834 * 7 2 1 10 10 O 1.21690 * 119.99902 * 5.75375 * 9 7 2 11 11 N 1.34776 * 119.99953 * 185.75589 * 9 7 2 12 12 C 1.46499 * 119.99860 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.85771 * 34.29391 * 12 11 9 14 14 C 1.54629 * 110.96906 * 270.50777 * 12 11 9 15 15 C 1.51336 * 104.16775 * 217.10931 * 14 12 11 16 16 O 1.21278 * 124.93026 * 196.25138 * 15 14 12 17 17 N 1.34423 * 110.12899 * 16.20000 * 15 14 12 18 18 C 1.46505 * 124.34935 * 180.46016 * 17 15 14 19 19 C 1.52997 * 117.49675 * 8.59488 * 18 17 15 20 20 C 1.52997 * 60.00114 * 252.51245 * 19 18 17 21 21 C 1.46761 * 111.30262 * 0.44041 * 17 15 14 22 22 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 23 23 H 0.96996 * 119.99702 * 359.97438 * 11 9 7 24 24 H 1.09002 * 110.48628 * 335.76476 * 14 12 11 25 25 H 1.09003 * 110.48480 * 98.40433 * 14 12 11 26 26 H 1.08996 * 115.55242 * 154.30913 * 18 17 15 27 27 H 1.08996 * 117.50081 * 0.02562 * 19 18 17 28 28 H 1.09010 * 117.49434 * 145.02186 * 19 18 17 29 29 H 1.08998 * 117.49682 * 252.51210 * 20 19 18 30 30 H 1.08999 * 117.51138 * 107.48878 * 20 19 18 31 31 H 1.08997 * 110.24683 * 223.98445 * 21 17 15 32 32 H 1.09001 * 110.31905 * 102.01920 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4947 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 -0.0993 9 6 1.2808 -2.4772 0.1304 10 8 0.0639 -2.4825 0.1324 11 7 1.9600 -3.6354 0.2476 12 6 1.2332 -4.9008 0.3770 13 1 0.3095 -4.8787 -0.2014 14 6 0.9488 -5.2263 1.8616 15 6 1.1101 -6.7285 1.9489 16 8 0.7073 -7.4183 2.8615 17 7 1.7637 -7.1872 0.8676 18 6 2.0789 -8.5979 0.6289 19 6 1.4614 -9.6296 1.5750 20 6 2.9552 -9.3103 1.6612 21 6 2.1205 -6.0934 -0.0436 22 1 -0.4850 0.8401 0.0004 23 1 2.9299 -3.6311 0.2456 24 1 1.6716 -4.7270 2.5069 25 1 -0.0672 -4.9349 2.1282 26 1 2.2004 -8.8822 -0.4163 27 1 0.8202 -9.2588 2.3747 28 1 1.1761 -10.5930 1.1521 29 1 3.6527 -10.0637 1.2950 30 1 3.2973 -8.7295 2.5177 31 1 1.9079 -6.3766 -1.0744 32 1 3.1741 -5.8371 0.0671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274662594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:49 Heat of formation + Delta-G solvation = -62.601005 kcal Electronic energy + Delta-G solvation = -16704.078200 eV Core-core repulsion = 13857.620742 eV Total energy + Delta-G solvation = -2846.457457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78249 -39.41712 -37.69922 -37.25995 -34.73530 -34.01551 -30.97238 -28.83022 -27.73707 -23.99378 -23.48058 -23.00974 -21.52287 -20.22095 -19.28074 -18.00475 -17.67261 -17.13452 -16.70500 -15.88225 -15.78387 -15.34628 -15.05678 -14.74256 -14.34811 -14.25912 -14.06600 -13.85446 -13.05601 -12.81164 -12.63159 -12.57010 -12.50472 -12.30343 -11.99958 -11.92935 -11.37987 -10.91584 -10.73896 -9.85989 -9.57021 -9.52383 -8.28149 -6.82579 1.36554 1.43326 1.44719 1.60298 1.79399 2.26512 2.48667 2.83077 2.97049 3.40560 3.48325 3.68212 3.90526 3.91992 4.02752 4.06977 4.19390 4.49613 4.53300 4.73154 4.78579 4.86359 4.96091 5.02936 5.28704 5.35971 5.65015 5.89754 5.95675 6.19610 6.28023 6.90204 7.02898 7.54649 8.50519 8.68826 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060839 B = 0.004924 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.118993 B = 5684.758255 C = 5838.065408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.541 3.459 10 O -0.628 6.628 11 N -0.738 5.738 12 C 0.149 3.851 13 H 0.073 0.927 14 C -0.165 4.165 15 C 0.521 3.479 16 O -0.565 6.565 17 N -0.585 5.585 18 C 0.073 3.927 19 C -0.203 4.203 20 C -0.180 4.180 21 C 0.114 3.886 22 H 0.274 0.726 23 H 0.401 0.599 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.166 0.834 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -12.986 -1.799 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.171 1.171 7 C -0.607 4.607 8 H 0.110 0.890 9 C 0.346 3.654 10 O -0.515 6.515 11 N -0.393 5.393 12 C 0.041 3.959 13 H 0.092 0.908 14 C -0.207 4.207 15 C 0.310 3.690 16 O -0.446 6.446 17 N -0.316 5.316 18 C -0.029 4.029 19 C -0.240 4.240 20 C -0.219 4.219 21 C -0.008 4.008 22 H 0.083 0.917 23 H 0.236 0.764 24 H 0.124 0.876 25 H 0.097 0.903 26 H 0.183 0.817 27 H 0.113 0.887 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.340 -13.328 -1.380 15.783 hybrid contribution 0.185 0.884 0.312 0.956 sum 8.525 -12.444 -1.068 15.122 Atomic orbital electron populations 1.70184 1.09539 1.28909 1.36452 1.26922 0.95410 1.04896 0.91256 0.85046 0.79006 0.75404 0.79111 1.18759 1.20263 1.17055 1.21430 0.95379 0.90034 1.53864 0.89008 1.18578 0.86765 0.84111 0.75953 1.90581 1.16255 1.87323 1.57332 1.45687 1.09280 1.04260 1.80050 1.21289 0.96335 0.85003 0.93268 0.90836 1.22821 1.04375 0.92773 1.00747 1.20987 0.76358 0.90358 0.81305 1.90559 1.52690 1.63837 1.37467 1.47721 1.55472 1.07031 1.21421 1.21985 1.05156 0.77395 0.98381 1.23686 0.97343 0.99932 1.03083 1.23368 0.93978 1.03517 1.01001 1.22380 0.99907 0.83789 0.94763 0.91650 0.76352 0.87638 0.90289 0.81724 0.88666 0.86054 0.85115 0.90931 0.87098 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.96 11.85 21.83 0.26 -48.70 16 2 C 0.03 1.64 5.49 85.30 0.47 2.10 16 3 Si 0.99 39.40 29.56 68.60 2.03 41.42 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 7 C -0.57 -30.44 9.53 24.83 0.24 -30.21 16 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.54 29.25 7.74 86.36 0.67 29.92 16 10 O -0.63 -40.08 14.73 -4.32 -0.06 -40.14 16 11 N -0.74 -29.15 5.16 -441.79 -2.28 -31.43 16 12 C 0.15 5.10 3.48 46.05 0.16 5.26 16 13 H 0.07 2.95 7.63 -2.39 -0.02 2.93 16 14 C -0.17 -5.88 6.60 30.61 0.20 -5.68 16 15 C 0.52 17.51 7.88 87.91 0.69 18.20 16 16 O -0.57 -22.12 14.69 -3.02 -0.04 -22.16 16 17 N -0.59 -15.10 3.27 -793.97 -2.60 -17.69 16 18 C 0.07 1.47 6.88 44.99 0.31 1.78 16 19 C -0.20 -4.49 9.77 30.59 0.30 -4.19 16 20 C -0.18 -3.45 10.34 30.59 0.32 -3.13 16 21 C 0.11 2.63 7.07 86.83 0.61 3.25 16 22 H 0.27 14.84 8.29 -92.71 -0.77 14.08 16 23 H 0.40 12.97 8.37 -92.71 -0.78 12.19 16 24 H 0.11 3.70 8.08 -2.39 -0.02 3.68 16 25 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.10 2.90 5.30 -2.39 -0.01 2.89 16 28 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 1.91 7.78 -2.39 -0.02 1.89 16 Total: -1.00 -76.16 277.54 1.64 -74.53 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.37 Total: 26.87 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 3.97 Total: 17.31 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -4.62 Total: -97.83 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -0.11 Total: -62.30 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Total: -76.16 1.64 -74.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.926 kcal (2) G-P(sol) polarization free energy of solvation -76.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds