Wall clock time and date at job start Sun Mar 29 2020 21:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48498 * 109.47197 * 264.71723 * 3 2 1 5 5 H 1.48497 * 109.46977 * 24.72182 * 3 2 1 6 6 H 1.48501 * 109.46564 * 144.71744 * 3 2 1 7 7 C 1.40049 * 120.00118 * 179.73030 * 2 1 3 8 8 H 1.07999 * 120.00061 * 187.09394 * 7 2 1 9 9 C 1.46380 * 119.99947 * 7.09428 * 7 2 1 10 10 O 1.21691 * 119.99647 * 6.75828 * 9 7 2 11 11 N 1.34772 * 119.99875 * 186.75740 * 9 7 2 12 12 C 1.46506 * 119.99922 * 179.97438 * 11 9 7 13 13 H 1.08999 * 110.85139 * 322.66321 * 12 11 9 14 14 C 1.54630 * 110.96827 * 86.45431 * 12 11 9 15 15 C 1.51277 * 104.19439 * 142.91883 * 14 12 11 16 16 O 1.21287 * 124.94389 * 163.78145 * 15 14 12 17 17 N 1.34423 * 110.11685 * 343.74243 * 15 14 12 18 18 C 1.46494 * 124.35017 * 179.61431 * 17 15 14 19 19 C 1.53002 * 117.50244 * 8.65048 * 18 17 15 20 20 C 1.53001 * 60.00151 * 252.50985 * 19 18 17 21 21 C 1.46765 * 111.29742 * 359.59573 * 17 15 14 22 22 H 0.97005 * 120.00470 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99940 * 359.97438 * 11 9 7 24 24 H 1.09001 * 110.48380 * 261.59139 * 14 12 11 25 25 H 1.08993 * 110.48948 * 24.10451 * 14 12 11 26 26 H 1.09007 * 115.54825 * 154.36055 * 18 17 15 27 27 H 1.09001 * 117.49483 * 359.97438 * 19 18 17 28 28 H 1.08997 * 117.50075 * 145.02047 * 19 18 17 29 29 H 1.08998 * 117.49713 * 252.51203 * 20 19 18 30 30 H 1.09006 * 117.50135 * 107.48600 * 20 19 18 31 31 H 1.08999 * 110.24473 * 258.01119 * 21 17 15 32 32 H 1.09010 * 110.24031 * 136.01282 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5997 1.9820 -1.3941 5 1 1.3867 2.6823 0.5855 6 1 3.4779 1.4749 0.8087 7 6 2.0070 -1.2128 0.0057 8 1 3.0808 -1.2159 0.1212 9 6 1.2835 -2.4764 -0.1449 10 8 0.0932 -2.4695 -0.3977 11 7 1.9357 -3.6473 -0.0036 12 6 1.2115 -4.9120 -0.1538 13 1 0.2079 -4.8364 0.2648 14 6 1.1614 -5.3482 -1.6364 15 6 1.3009 -6.8537 -1.5851 16 8 1.0348 -7.6075 -2.4971 17 7 1.7636 -7.2343 -0.3817 18 6 2.0068 -8.6253 0.0081 19 6 1.9085 -9.6926 -1.0837 20 6 0.8155 -9.5851 -0.0184 21 6 1.9943 -6.0771 0.4911 22 1 -0.4851 0.8400 0.0004 23 1 2.8846 -3.6527 0.1975 24 1 0.2078 -5.0686 -2.0843 25 1 1.9875 -4.9053 -2.1926 26 1 2.7532 -8.7710 0.7891 27 1 1.6624 -9.3598 -2.0921 28 1 2.5903 -10.5407 -1.0214 29 1 0.7785 -10.3624 0.7448 30 1 -0.1492 -9.1815 -0.3260 31 1 3.0576 -5.8409 0.5311 32 1 1.6138 -6.2785 1.4926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274662595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:52 Heat of formation + Delta-G solvation = -38.213516 kcal Electronic energy + Delta-G solvation = -16707.863131 eV Core-core repulsion = 13862.463195 eV Total energy + Delta-G solvation = -2845.399937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51148 -37.63119 -36.55044 -35.76391 -32.87657 -32.18707 -29.49545 -27.31027 -25.98607 -22.90118 -22.44131 -21.60515 -19.78575 -18.93280 -17.40959 -16.82453 -16.12372 -15.60511 -15.28130 -14.38006 -14.19601 -14.05376 -13.55113 -13.47116 -13.09074 -12.72919 -12.40743 -12.21875 -11.55741 -11.35053 -11.16469 -11.09181 -10.99813 -10.74295 -10.54042 -10.45523 -10.29405 -9.43214 -8.90826 -8.46142 -7.75297 -7.70802 -6.29780 -4.72067 2.69149 2.91577 3.11139 3.18085 3.20141 3.81105 4.03655 4.42682 4.46171 4.70376 4.74972 4.82637 4.93419 5.08085 5.28952 5.42761 5.47430 5.61891 5.65345 5.77290 5.85954 5.96061 6.24282 6.31320 6.42224 6.72584 7.18119 7.36496 7.76719 7.92267 8.22586 8.31704 8.94809 9.37885 10.49645 10.66983 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.063648 B = 0.004883 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.815547 B = 5732.926273 C = 5827.554260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.090 3.910 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.755 5.755 12 C 0.152 3.848 13 H 0.098 0.902 14 C -0.167 4.167 15 C 0.523 3.477 16 O -0.537 6.537 17 N -0.593 5.593 18 C 0.081 3.919 19 C -0.192 4.192 20 C -0.193 4.193 21 C 0.100 3.900 22 H 0.270 0.730 23 H 0.383 0.617 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -12.289 2.651 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.461 6.461 11 N -0.411 5.411 12 C 0.044 3.956 13 H 0.116 0.884 14 C -0.209 4.209 15 C 0.312 3.688 16 O -0.415 6.415 17 N -0.326 5.326 18 C -0.023 4.023 19 C -0.229 4.229 20 C -0.231 4.231 21 C -0.023 4.023 22 H 0.081 0.919 23 H 0.216 0.784 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.840 -12.595 2.030 13.645 hybrid contribution 0.956 0.754 0.230 1.239 sum 5.795 -11.841 2.260 13.376 Atomic orbital electron populations 1.69971 1.07153 1.27629 1.34833 1.25685 0.94588 1.00344 0.92445 0.86374 0.80015 0.81188 0.79092 1.19591 1.20515 1.18969 1.20841 0.94322 0.89374 1.53770 0.91250 1.18251 0.86758 0.82167 0.76680 1.90610 1.15906 1.86606 1.52944 1.46186 1.11650 1.03961 1.79284 1.21289 0.97513 0.84493 0.92287 0.88444 1.22927 1.05926 0.91187 1.00843 1.21199 0.74920 0.91457 0.81182 1.90552 1.51496 1.59348 1.40065 1.47677 1.65062 1.05097 1.14773 1.21485 1.00785 0.78129 1.01900 1.23752 1.01541 0.99190 0.98439 1.23347 0.95050 1.02361 1.02365 1.22393 1.00790 0.84752 0.94371 0.91899 0.78416 0.87766 0.87583 0.85504 0.85065 0.88748 0.88372 0.88688 0.90699 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.24 11.91 55.55 0.66 -21.58 16 2 C 0.09 2.41 5.48 -17.37 -0.10 2.31 16 3 Si 0.91 19.44 29.56 -169.99 -5.03 14.41 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.55 -14.62 9.53 -35.63 -0.34 -14.96 16 8 H 0.07 1.69 7.86 -52.49 -0.41 1.27 16 9 C 0.56 14.79 7.72 -12.99 -0.10 14.69 16 10 O -0.58 -17.71 14.86 5.20 0.08 -17.63 16 11 N -0.76 -15.10 5.18 -53.63 -0.28 -15.37 16 12 C 0.15 2.63 3.43 -66.30 -0.23 2.40 16 13 H 0.10 1.90 7.72 -51.93 -0.40 1.50 16 14 C -0.17 -2.89 6.59 -26.74 -0.18 -3.07 16 15 C 0.52 8.77 7.88 -10.86 -0.09 8.68 16 16 O -0.54 -10.23 14.69 5.55 0.08 -10.15 16 17 N -0.59 -8.27 3.27 -164.84 -0.54 -8.81 16 18 C 0.08 0.95 6.88 -67.93 -0.47 0.48 16 19 C -0.19 -2.29 9.77 -26.73 -0.26 -2.55 16 20 C -0.19 -2.17 10.34 -26.73 -0.28 -2.45 16 21 C 0.10 1.30 7.07 -3.12 -0.02 1.28 16 22 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 23 H 0.38 6.54 8.34 -40.82 -0.34 6.20 16 24 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 25 H 0.11 1.82 8.08 -51.93 -0.42 1.40 16 26 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 27 H 0.13 1.98 5.29 -51.93 -0.27 1.71 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 32 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -33.34 277.69 -6.81 -40.15 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.92 Total: 7.99 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.05 Total: 6.80 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.16 Total: -45.76 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: 0.16 Total: -27.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.34 -6.81 -40.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.938 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds