Wall clock time and date at job start Sun Mar 29 2020 21:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48498 * 109.47197 * 264.71723 * 3 2 1 5 5 H 1.48497 * 109.46977 * 24.72182 * 3 2 1 6 6 H 1.48501 * 109.46564 * 144.71744 * 3 2 1 7 7 C 1.40049 * 120.00118 * 179.73030 * 2 1 3 8 8 H 1.07999 * 120.00061 * 187.09394 * 7 2 1 9 9 C 1.46380 * 119.99947 * 7.09428 * 7 2 1 10 10 O 1.21691 * 119.99647 * 6.75828 * 9 7 2 11 11 N 1.34772 * 119.99875 * 186.75740 * 9 7 2 12 12 C 1.46506 * 119.99922 * 179.97438 * 11 9 7 13 13 H 1.08999 * 110.85139 * 322.66321 * 12 11 9 14 14 C 1.54630 * 110.96827 * 86.45431 * 12 11 9 15 15 C 1.51277 * 104.19439 * 142.91883 * 14 12 11 16 16 O 1.21287 * 124.94389 * 163.78145 * 15 14 12 17 17 N 1.34423 * 110.11685 * 343.74243 * 15 14 12 18 18 C 1.46494 * 124.35017 * 179.61431 * 17 15 14 19 19 C 1.53002 * 117.50244 * 8.65048 * 18 17 15 20 20 C 1.53001 * 60.00151 * 252.50985 * 19 18 17 21 21 C 1.46765 * 111.29742 * 359.59573 * 17 15 14 22 22 H 0.97005 * 120.00470 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99940 * 359.97438 * 11 9 7 24 24 H 1.09001 * 110.48380 * 261.59139 * 14 12 11 25 25 H 1.08993 * 110.48948 * 24.10451 * 14 12 11 26 26 H 1.09007 * 115.54825 * 154.36055 * 18 17 15 27 27 H 1.09001 * 117.49483 * 359.97438 * 19 18 17 28 28 H 1.08997 * 117.50075 * 145.02047 * 19 18 17 29 29 H 1.08998 * 117.49713 * 252.51203 * 20 19 18 30 30 H 1.09006 * 117.50135 * 107.48600 * 20 19 18 31 31 H 1.08999 * 110.24473 * 258.01119 * 21 17 15 32 32 H 1.09010 * 110.24031 * 136.01282 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5997 1.9820 -1.3941 5 1 1.3867 2.6823 0.5855 6 1 3.4779 1.4749 0.8087 7 6 2.0070 -1.2128 0.0057 8 1 3.0808 -1.2159 0.1212 9 6 1.2835 -2.4764 -0.1449 10 8 0.0932 -2.4695 -0.3977 11 7 1.9357 -3.6473 -0.0036 12 6 1.2115 -4.9120 -0.1538 13 1 0.2079 -4.8364 0.2648 14 6 1.1614 -5.3482 -1.6364 15 6 1.3009 -6.8537 -1.5851 16 8 1.0348 -7.6075 -2.4971 17 7 1.7636 -7.2343 -0.3817 18 6 2.0068 -8.6253 0.0081 19 6 1.9085 -9.6926 -1.0837 20 6 0.8155 -9.5851 -0.0184 21 6 1.9943 -6.0771 0.4911 22 1 -0.4851 0.8400 0.0004 23 1 2.8846 -3.6527 0.1975 24 1 0.2078 -5.0686 -2.0843 25 1 1.9875 -4.9053 -2.1926 26 1 2.7532 -8.7710 0.7891 27 1 1.6624 -9.3598 -2.0921 28 1 2.5903 -10.5407 -1.0214 29 1 0.7785 -10.3624 0.7448 30 1 -0.1492 -9.1815 -0.3260 31 1 3.0576 -5.8409 0.5311 32 1 1.6138 -6.2785 1.4926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274662595.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:52 Heat of formation + Delta-G solvation = -62.945163 kcal Electronic energy + Delta-G solvation = -16708.935576 eV Core-core repulsion = 13862.463195 eV Total energy + Delta-G solvation = -2846.472381 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78843 -39.42054 -37.70164 -37.25903 -34.73503 -34.02313 -30.98116 -28.83408 -27.74140 -23.98751 -23.44267 -23.05845 -21.55133 -20.20582 -19.26111 -17.93078 -17.69172 -17.20853 -16.76375 -15.85300 -15.62435 -15.54592 -15.06850 -14.67589 -14.38220 -14.23857 -14.06523 -13.86603 -13.08816 -12.83080 -12.70013 -12.54122 -12.42400 -12.30120 -12.00158 -11.93785 -11.37778 -10.91658 -10.75773 -9.85434 -9.58324 -9.51894 -8.30319 -6.81980 1.36015 1.43701 1.45420 1.59279 1.79565 2.26572 2.48359 2.81746 2.97996 3.39231 3.49127 3.66920 3.90895 3.92207 4.00192 4.08838 4.17596 4.47917 4.55737 4.72490 4.78117 4.85943 4.96439 5.02481 5.28248 5.35813 5.64967 5.89589 5.95578 6.19235 6.28053 6.90182 7.02692 7.54773 8.50340 8.68210 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.063648 B = 0.004883 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.815547 B = 5732.926273 C = 5827.554260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.246 1.246 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.543 3.457 10 O -0.630 6.630 11 N -0.738 5.738 12 C 0.149 3.851 13 H 0.070 0.930 14 C -0.165 4.165 15 C 0.521 3.479 16 O -0.565 6.565 17 N -0.586 5.586 18 C 0.075 3.925 19 C -0.198 4.198 20 C -0.188 4.188 21 C 0.114 3.886 22 H 0.274 0.726 23 H 0.402 0.598 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.169 0.831 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -12.899 4.259 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.169 1.169 7 C -0.609 4.609 8 H 0.110 0.890 9 C 0.348 3.652 10 O -0.517 6.517 11 N -0.393 5.393 12 C 0.042 3.958 13 H 0.088 0.912 14 C -0.207 4.207 15 C 0.310 3.690 16 O -0.446 6.446 17 N -0.317 5.317 18 C -0.027 4.027 19 C -0.235 4.235 20 C -0.227 4.227 21 C -0.008 4.008 22 H 0.084 0.916 23 H 0.237 0.763 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.186 0.814 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.599 -13.262 3.678 15.721 hybrid contribution 0.093 0.851 -0.285 0.902 sum 7.692 -12.411 3.393 14.991 Atomic orbital electron populations 1.70139 1.09570 1.29060 1.36460 1.26905 0.95393 1.04879 0.91157 0.85071 0.78805 0.75254 0.79414 1.19093 1.20133 1.16889 1.21414 0.95580 0.90033 1.53826 0.88976 1.18563 0.86294 0.84115 0.76237 1.90574 1.18168 1.87800 1.55162 1.45690 1.12378 1.03429 1.77777 1.21278 0.96926 0.84972 0.92650 0.91210 1.22799 1.04595 0.92481 1.00802 1.20975 0.75338 0.90669 0.82022 1.90559 1.52996 1.59650 1.41354 1.47726 1.63678 1.06693 1.13574 1.21994 1.01884 0.76243 1.02576 1.23691 1.02696 1.00383 0.96780 1.23383 0.93580 1.02900 1.02809 1.22376 1.01759 0.82183 0.94481 0.91577 0.76276 0.90426 0.87516 0.81405 0.88589 0.85812 0.85158 0.91388 0.87665 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.96 11.91 21.84 0.26 -48.70 16 2 C 0.03 1.72 5.48 85.30 0.47 2.19 16 3 Si 0.99 39.41 29.56 68.60 2.03 41.44 16 4 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 7 C -0.57 -30.52 9.53 24.83 0.24 -30.28 16 8 H 0.09 4.32 7.86 -2.91 -0.02 4.30 16 9 C 0.54 29.38 7.72 86.36 0.67 30.05 16 10 O -0.63 -40.27 14.86 -4.32 -0.06 -40.33 16 11 N -0.74 -29.13 5.18 -441.80 -2.29 -31.42 16 12 C 0.15 5.14 3.43 46.05 0.16 5.30 16 13 H 0.07 2.82 7.72 -2.39 -0.02 2.80 16 14 C -0.16 -5.89 6.59 30.59 0.20 -5.69 16 15 C 0.52 17.53 7.88 87.90 0.69 18.23 16 16 O -0.57 -22.14 14.69 -3.05 -0.04 -22.19 16 17 N -0.59 -15.09 3.27 -794.01 -2.60 -17.68 16 18 C 0.08 1.51 6.88 45.00 0.31 1.82 16 19 C -0.20 -4.32 9.77 30.60 0.30 -4.03 16 20 C -0.19 -3.81 10.34 30.60 0.32 -3.49 16 21 C 0.11 2.63 7.07 86.83 0.61 3.24 16 22 H 0.27 14.88 8.29 -92.70 -0.77 14.11 16 23 H 0.40 12.89 8.34 -92.71 -0.77 12.12 16 24 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.11 3.74 8.08 -2.39 -0.02 3.72 16 26 H 0.17 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.10 2.89 5.29 -2.39 -0.01 2.88 16 28 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.11 1.90 7.77 -2.39 -0.02 1.88 16 32 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -76.40 277.69 1.63 -74.78 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.37 Total: 26.77 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 3.96 Total: 17.34 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.63 Total: -97.80 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.11 Total: -62.52 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -76.40 1.63 -74.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274662595.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.834 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds