Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48491 * 109.47391 * 270.00330 * 3 2 1 5 5 H 1.48509 * 109.47224 * 30.00543 * 3 2 1 6 6 H 1.48503 * 109.46659 * 150.00118 * 3 2 1 7 7 C 1.37878 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47249 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47622 * 180.02562 * 10 9 7 12 12 C 1.33788 * 124.17957 * 269.70283 * 11 10 9 13 13 O 1.21538 * 123.77069 * 0.23765 * 12 11 10 14 14 N 1.34528 * 112.45954 * 180.26516 * 12 11 10 15 15 C 1.47311 * 106.62000 * 359.97438 * 14 12 11 16 16 H 1.08994 * 110.60134 * 118.53170 * 15 14 12 17 17 C 1.53001 * 110.59518 * 241.47604 * 15 14 12 18 18 C 1.53001 * 117.50157 * 2.79045 * 17 15 14 19 19 C 1.53000 * 60.00055 * 252.51385 * 18 17 15 20 20 C 1.34774 * 124.17849 * 89.99659 * 11 10 9 21 21 O 1.21236 * 127.15325 * 359.70166 * 20 11 10 22 22 H 0.96998 * 119.99606 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47051 * 60.00253 * 9 7 2 24 24 H 1.09004 * 109.47520 * 300.00030 * 9 7 2 25 25 H 1.09001 * 109.47058 * 60.00049 * 10 9 7 26 26 H 1.09004 * 109.46714 * 300.00316 * 10 9 7 27 27 H 0.97005 * 126.68527 * 179.97438 * 14 12 11 28 28 H 1.08998 * 115.54853 * 148.50159 * 17 15 14 29 29 H 1.08997 * 117.49824 * 0.02562 * 18 17 15 30 30 H 1.08997 * 117.49859 * 145.01924 * 18 17 15 31 31 H 1.08998 * 117.49426 * 252.50748 * 19 18 17 32 32 H 1.09000 * 117.49977 * 107.49125 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.1416 -5.5849 1.1053 13 8 1.3708 -5.1909 2.2320 14 7 0.4869 -6.7278 0.8315 15 6 0.4211 -6.8343 -0.6363 16 1 0.9409 -7.7287 -0.9796 17 6 -1.0335 -6.8400 -1.1108 18 6 -2.1234 -6.6738 -0.0499 19 6 -1.9019 -8.0351 -0.7125 20 6 1.1346 -5.5861 -1.1164 21 8 1.3245 -5.2472 -2.2649 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.1281 -7.3586 1.4751 28 1 -1.2106 -6.3930 -2.0890 29 1 -1.8042 -6.5601 0.9860 30 1 -3.0177 -6.1173 -0.3301 31 1 -2.6506 -8.3740 -1.4284 32 1 -1.4370 -8.8172 -0.1123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279952400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = -21.544341 kcal Electronic energy + Delta-G solvation = -17028.004295 eV Core-core repulsion = 14183.327189 eV Total energy + Delta-G solvation = -2844.677107 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13935 -38.23267 -37.70063 -35.47720 -34.50651 -32.78507 -29.88825 -28.01393 -25.23857 -22.97351 -22.54063 -21.96161 -20.69360 -19.82912 -17.73723 -16.83787 -16.42538 -16.33566 -15.53745 -15.05192 -14.74834 -14.46304 -14.10970 -13.87660 -13.58266 -12.93383 -12.42785 -12.12346 -11.67822 -11.55696 -10.97273 -10.91876 -10.78544 -10.52874 -10.43216 -10.11786 -10.07066 -9.70204 -9.42003 -9.23707 -8.87018 -8.37983 -6.02837 -4.06591 1.90499 2.58643 3.20903 3.33308 3.38977 3.41621 3.43092 3.68170 4.13251 4.36647 4.45704 4.67013 4.78448 5.16572 5.19092 5.33814 5.43618 5.46429 5.76511 5.89426 5.97593 6.05113 6.16039 6.32249 6.66827 6.88798 7.38580 7.59094 7.71316 7.73638 7.94244 8.28952 8.45579 8.98563 9.57377 11.08869 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.006153 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.311926 B = 4549.714110 C = 4664.830031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.567 5.567 12 C 0.702 3.298 13 O -0.539 6.539 14 N -0.732 5.732 15 C 0.124 3.876 16 H 0.126 0.874 17 C -0.163 4.163 18 C -0.167 4.167 19 C -0.169 4.169 20 C 0.527 3.473 21 O -0.468 6.468 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.024 0.976 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.434 0.566 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -17.071 -1.201 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.312 5.312 12 C 0.403 3.597 13 O -0.412 6.412 14 N -0.397 5.397 15 C 0.015 3.985 16 H 0.143 0.857 17 C -0.182 4.182 18 C -0.204 4.204 19 C -0.206 4.206 20 C 0.312 3.688 21 O -0.337 6.337 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.278 0.722 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.190 -16.420 -1.231 16.611 hybrid contribution 0.154 0.668 0.226 0.722 sum -2.036 -15.752 -1.004 15.915 Atomic orbital electron populations 1.69976 1.06149 1.26794 1.50147 1.24998 0.94879 0.99390 0.94967 0.86500 0.79801 0.83024 0.78127 1.20565 1.21174 1.19716 1.20999 0.93092 0.90321 1.51637 0.92233 1.19403 0.94264 0.90760 0.98081 1.22211 0.95626 0.79165 1.02980 1.46695 1.53026 1.24400 1.07043 1.15918 0.78566 0.80475 0.84700 1.91002 1.59644 1.69946 1.20613 1.45587 1.62009 1.25067 1.07075 1.21503 0.96531 0.99049 0.81426 0.85670 1.22389 0.89268 1.05118 1.01435 1.23047 0.99699 0.99350 0.98342 1.22998 1.02453 0.91421 1.03729 1.20611 0.78103 0.84779 0.85257 1.90785 1.54092 1.70778 1.18080 0.92871 0.96039 0.95784 0.89690 0.89892 0.72242 0.85688 0.88076 0.88177 0.88239 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 10 C 0.12 2.59 5.64 -4.05 -0.02 2.57 16 11 N -0.57 -10.66 2.60 -120.73 -0.31 -10.98 16 12 C 0.70 12.39 8.62 -88.02 -0.76 11.63 16 13 O -0.54 -11.48 17.48 5.33 0.09 -11.39 16 14 N -0.73 -8.84 4.79 -59.20 -0.28 -9.12 16 15 C 0.12 1.43 4.04 -68.21 -0.28 1.16 16 16 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.16 -1.73 5.76 -90.62 -0.52 -2.25 16 18 C -0.17 -1.71 9.86 -26.73 -0.26 -1.97 16 19 C -0.17 -1.30 10.24 -26.73 -0.27 -1.57 16 20 C 0.53 8.84 7.64 -10.55 -0.08 8.76 16 21 O -0.47 -9.10 17.76 5.60 0.10 -9.00 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 26 H 0.08 1.73 8.01 -51.93 -0.42 1.32 16 27 H 0.43 3.92 8.57 -40.82 -0.35 3.57 16 28 H 0.13 1.43 8.13 -51.93 -0.42 1.01 16 29 H 0.10 1.08 6.73 -51.93 -0.35 0.73 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 282.65 15.07 4.26 4.26 Total: -1.00 -34.10 282.65 -7.21 -41.30 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.02 Total: -0.32 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.76 Total: 4.88 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.14 Total: -46.61 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.19 Total: -20.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.10 -7.21 -41.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279952400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.760 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds