Wall clock time and date at job start Sun Mar 29 2020 21:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48491 * 109.47391 * 270.00330 * 3 2 1 5 5 H 1.48509 * 109.47224 * 30.00543 * 3 2 1 6 6 H 1.48503 * 109.46659 * 150.00118 * 3 2 1 7 7 C 1.37878 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00162 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47249 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47622 * 180.02562 * 10 9 7 12 12 C 1.33788 * 124.17957 * 269.70283 * 11 10 9 13 13 O 1.21538 * 123.77069 * 0.23765 * 12 11 10 14 14 N 1.34528 * 112.45954 * 180.26516 * 12 11 10 15 15 C 1.47311 * 106.62000 * 359.97438 * 14 12 11 16 16 H 1.08994 * 110.60134 * 118.53170 * 15 14 12 17 17 C 1.53001 * 110.59518 * 241.47604 * 15 14 12 18 18 C 1.53001 * 117.50157 * 2.79045 * 17 15 14 19 19 C 1.53000 * 60.00055 * 252.51385 * 18 17 15 20 20 C 1.34774 * 124.17849 * 89.99659 * 11 10 9 21 21 O 1.21236 * 127.15325 * 359.70166 * 20 11 10 22 22 H 0.96998 * 119.99606 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47051 * 60.00253 * 9 7 2 24 24 H 1.09004 * 109.47520 * 300.00030 * 9 7 2 25 25 H 1.09001 * 109.47058 * 60.00049 * 10 9 7 26 26 H 1.09004 * 109.46714 * 300.00316 * 10 9 7 27 27 H 0.97005 * 126.68527 * 179.97438 * 14 12 11 28 28 H 1.08998 * 115.54853 * 148.50159 * 17 15 14 29 29 H 1.08997 * 117.49824 * 0.02562 * 18 17 15 30 30 H 1.08997 * 117.49859 * 145.01924 * 18 17 15 31 31 H 1.08998 * 117.49426 * 252.50748 * 19 18 17 32 32 H 1.09000 * 117.49977 * 107.49125 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.1416 -5.5849 1.1053 13 8 1.3708 -5.1909 2.2320 14 7 0.4869 -6.7278 0.8315 15 6 0.4211 -6.8343 -0.6363 16 1 0.9409 -7.7287 -0.9796 17 6 -1.0335 -6.8400 -1.1108 18 6 -2.1234 -6.6738 -0.0499 19 6 -1.9019 -8.0351 -0.7125 20 6 1.1346 -5.5861 -1.1164 21 8 1.3245 -5.2472 -2.2649 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.1281 -7.3586 1.4751 28 1 -1.2106 -6.3930 -2.0890 29 1 -1.8042 -6.5601 0.9860 30 1 -3.0177 -6.1173 -0.3301 31 1 -2.6506 -8.3740 -1.4284 32 1 -1.4370 -8.8172 -0.1123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279952400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:56 Heat of formation + Delta-G solvation = -45.587800 kcal Electronic energy + Delta-G solvation = -17029.046898 eV Core-core repulsion = 14183.327189 eV Total energy + Delta-G solvation = -2845.719709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.47575 -39.67343 -38.70722 -36.99823 -36.04904 -34.68126 -31.80647 -29.15882 -27.20622 -24.29512 -23.89556 -23.22493 -21.68580 -21.36078 -19.10805 -18.64386 -17.94515 -17.63156 -16.71263 -16.54075 -16.46776 -15.99256 -15.32079 -15.17211 -14.92081 -14.80490 -14.36990 -13.60947 -13.02712 -12.89303 -12.73445 -12.39533 -12.19955 -12.10940 -12.03801 -11.67518 -11.44900 -11.28265 -10.90893 -10.73256 -10.62872 -10.43003 -8.26472 -6.39804 0.56421 1.22497 1.40297 1.42428 1.53792 1.97417 2.14630 2.39136 2.84956 2.96062 3.07772 3.46888 3.85191 3.97794 4.08729 4.34092 4.37702 4.40737 4.47873 4.56980 4.70880 4.81855 5.02304 5.15693 5.26820 5.33931 5.40679 5.70312 5.79688 6.06168 6.12149 6.38408 6.74387 7.10754 7.30166 8.86460 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.006153 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.311926 B = 4549.714110 C = 4664.830031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.025 3.975 10 C 0.133 3.867 11 N -0.580 5.580 12 C 0.698 3.302 13 O -0.582 6.582 14 N -0.699 5.699 15 C 0.143 3.857 16 H 0.175 0.825 17 C -0.183 4.183 18 C -0.190 4.190 19 C -0.126 4.126 20 C 0.517 3.483 21 O -0.500 6.500 22 H 0.265 0.735 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.453 0.547 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 -18.759 -1.415 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.013 4.013 10 C 0.013 3.987 11 N -0.324 5.324 12 C 0.399 3.601 13 O -0.459 6.459 14 N -0.366 5.366 15 C 0.035 3.965 16 H 0.192 0.808 17 C -0.203 4.203 18 C -0.227 4.227 19 C -0.162 4.162 20 C 0.306 3.694 21 O -0.372 6.372 22 H 0.074 0.926 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.300 0.700 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.822 -18.185 -1.453 18.334 hybrid contribution -0.046 1.156 0.258 1.186 sum -1.867 -17.029 -1.195 17.173 Atomic orbital electron populations 1.70122 1.08096 1.28073 1.50961 1.26064 0.95830 1.03783 0.94151 0.85291 0.78620 0.77544 0.78650 1.19484 1.20690 1.18301 1.21476 0.93926 0.91334 1.51669 0.91040 1.19163 0.94396 0.93017 0.94691 1.21726 0.94423 0.79204 1.03375 1.46687 1.53371 1.23787 1.08605 1.16046 0.78873 0.81522 0.83643 1.90971 1.61581 1.71315 1.22020 1.45397 1.59968 1.23219 1.07987 1.21661 0.97065 0.97540 0.80200 0.80831 1.22361 0.88536 1.08386 1.00967 1.23098 0.99405 1.02267 0.97932 1.23148 1.00494 0.90215 1.02383 1.21544 0.77524 0.86036 0.84327 1.90760 1.55247 1.71983 1.19168 0.92591 0.99224 0.99365 0.89544 0.89110 0.69954 0.86883 0.88651 0.88981 0.86661 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.98 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.80 16 8 H 0.07 3.92 7.74 -2.92 -0.02 3.90 16 9 C 0.03 1.42 5.30 29.85 0.16 1.58 16 10 C 0.13 5.99 5.64 86.38 0.49 6.47 16 11 N -0.58 -22.13 2.60 -773.13 -2.01 -24.14 16 12 C 0.70 24.52 8.62 179.44 1.55 26.07 16 13 O -0.58 -25.22 17.48 -3.83 -0.07 -25.29 16 14 N -0.70 -15.39 4.79 -459.62 -2.20 -17.59 16 15 C 0.14 2.94 4.04 44.37 0.18 3.12 16 16 H 0.17 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.18 -3.48 5.76 -10.79 -0.06 -3.54 16 18 C -0.19 -3.56 9.86 30.59 0.30 -3.26 16 19 C -0.13 -1.41 10.24 30.59 0.31 -1.10 16 20 C 0.52 17.19 7.64 87.94 0.67 17.87 16 21 O -0.50 -19.64 17.76 -2.89 -0.05 -19.69 16 22 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H 0.09 3.82 7.86 -2.39 -0.02 3.80 16 26 H 0.09 3.88 8.01 -2.39 -0.02 3.87 16 27 H 0.45 6.76 8.57 -92.70 -0.79 5.96 16 28 H 0.11 2.49 8.13 -2.39 -0.02 2.47 16 29 H 0.10 1.89 6.73 -2.39 -0.02 1.87 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.68 282.65 2.62 -75.07 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.34 Total: 6.93 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 4.29 Total: 15.86 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.93 Total: -100.06 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.12 Total: -44.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -77.68 2.62 -75.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279952400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.479 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds