Wall clock time and date at job start Sun Mar 29 2020 22:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 115.54848 * 2 1 4 4 C 1.52998 * 110.53114 * 153.03751 * 3 2 1 5 5 N 1.47307 * 110.60144 * 275.87126 * 3 2 1 6 6 C 1.34523 * 106.62033 * 118.53005 * 5 3 2 7 7 O 1.21520 * 123.76990 * 180.02562 * 6 5 3 8 8 N 1.33786 * 112.45846 * 0.26274 * 6 5 3 9 9 C 1.37512 * 124.17625 * 179.69370 * 8 6 5 10 10 H 1.07992 * 120.00032 * 32.78611 * 9 8 6 11 11 C 1.38898 * 119.99936 * 212.77860 * 9 8 6 12 12 N 1.31383 * 119.99789 * 19.87659 * 11 9 8 13 13 Si 1.86806 * 120.00086 * 199.86958 * 11 9 8 14 14 H 1.48495 * 109.46821 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46809 * 120.00397 * 13 11 9 16 16 H 1.48497 * 109.46932 * 240.00387 * 13 11 9 17 17 C 1.34766 * 111.64506 * 359.54231 * 8 6 5 18 18 O 1.21235 * 127.15912 * 180.14427 * 17 8 6 19 19 C 1.52995 * 117.49531 * 145.66795 * 2 1 3 20 20 C 1.53000 * 117.49962 * 214.32944 * 2 1 3 21 21 H 1.09003 * 109.47139 * 59.99957 * 1 2 3 22 22 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47186 * 299.99994 * 1 2 3 24 24 H 1.09000 * 109.47027 * 182.13080 * 4 3 2 25 25 H 1.09000 * 109.47784 * 302.12734 * 4 3 2 26 26 H 1.08998 * 109.47197 * 62.13355 * 4 3 2 27 27 H 0.97003 * 126.68305 * 298.50612 * 5 3 2 28 28 H 0.97012 * 119.99802 * 179.97438 * 12 11 9 29 29 H 1.09005 * 117.50069 * 214.99860 * 19 2 1 30 30 H 1.08992 * 117.50442 * 0.02859 * 19 2 1 31 31 H 1.09001 * 117.49532 * 359.97438 * 20 2 1 32 32 H 1.08999 * 117.49525 * 144.97659 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 3.5735 1.3138 0.6496 5 7 2.2862 1.9089 -1.3716 6 6 1.5635 3.0432 -1.3986 7 8 1.4311 3.7365 -2.3878 8 7 1.0109 3.3254 -0.2133 9 6 0.2296 4.4303 0.0313 10 1 -0.4007 4.8295 -0.7494 11 6 0.2511 5.0327 1.2827 12 7 1.2617 4.8227 2.0956 13 14 -1.1567 6.1418 1.8097 14 1 -2.1642 6.2138 0.7212 15 1 -1.7900 5.5896 3.0341 16 1 -0.6351 7.5030 2.0929 17 6 1.3117 2.3914 0.7104 18 8 0.9583 2.3676 1.8699 19 6 2.2364 -1.1207 0.7654 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0116 2.3116 0.6747 25 1 3.4796 0.9327 1.6665 26 1 4.2152 0.6497 0.0706 27 1 2.7756 1.5157 -2.1111 28 1 1.2769 5.2438 2.9694 29 1 3.1713 -0.8747 1.2689 30 1 1.6112 -1.8582 1.2685 31 1 1.6112 -1.8583 -1.2685 32 1 3.1712 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284299371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:07 Heat of formation + Delta-G solvation = -10.601964 kcal Electronic energy + Delta-G solvation = -18105.370268 eV Core-core repulsion = 15261.167658 eV Total energy + Delta-G solvation = -2844.202610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39583 -38.06272 -36.85527 -34.56291 -33.85767 -31.51141 -29.58537 -28.51176 -25.65973 -23.86819 -22.30049 -21.52155 -20.58637 -18.55015 -17.40733 -16.30496 -16.04416 -15.49652 -14.60744 -14.41050 -14.23744 -13.75317 -13.69932 -13.07144 -12.81446 -12.37036 -12.14490 -11.98534 -11.81784 -11.53413 -11.33048 -11.04157 -10.95758 -10.71988 -10.35337 -10.24627 -9.82837 -9.41390 -9.24065 -8.65343 -8.60659 -7.88947 -6.39570 -4.14386 3.03241 3.22128 3.28044 3.33638 3.51279 4.00090 4.19218 4.44932 4.51066 4.77086 5.00721 5.05971 5.07335 5.23948 5.43327 5.58840 5.71456 5.90960 5.95166 5.97038 6.06075 6.16649 6.20499 6.28959 6.47724 6.57376 6.73303 7.48303 7.69630 8.01795 8.26256 8.79146 9.10559 9.24144 9.86003 10.70428 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.009890 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.874100 B = 2830.361777 C = 3116.592360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.114 4.114 3 C 0.152 3.848 4 C -0.141 4.141 5 N -0.737 5.737 6 C 0.678 3.322 7 O -0.574 6.574 8 N -0.408 5.408 9 C -0.352 4.352 10 H 0.102 0.898 11 C 0.057 3.943 12 N -0.828 5.828 13 Si 0.928 3.072 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.280 1.280 17 C 0.508 3.492 18 O -0.459 6.459 19 C -0.167 4.167 20 C -0.170 4.170 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.419 0.581 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -10.826 -1.556 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.116 4.116 3 C 0.060 3.940 4 C -0.199 4.199 5 N -0.400 5.400 6 C 0.381 3.619 7 O -0.452 6.452 8 N -0.140 5.140 9 C -0.477 4.477 10 H 0.120 0.880 11 C -0.154 4.154 12 N -0.461 5.461 13 Si 0.753 3.247 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.206 1.206 17 C 0.294 3.706 18 O -0.330 6.330 19 C -0.205 4.205 20 C -0.207 4.207 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.558 -10.300 -1.195 10.680 hybrid contribution -0.181 0.338 -0.056 0.388 sum 2.377 -9.961 -1.251 10.317 Atomic orbital electron populations 1.21367 0.91506 1.01518 1.03193 1.21387 0.95285 0.88867 1.06012 1.20819 0.96858 0.92868 0.83414 1.21961 0.93865 1.03023 1.01027 1.45597 1.55680 1.26773 1.11969 1.16414 0.78866 0.81351 0.85242 1.90803 1.65929 1.53768 1.34740 1.41833 1.42341 1.21145 1.08715 1.19379 1.21778 1.06857 0.99720 0.87984 1.25315 0.96940 0.96804 0.96307 1.69924 1.27217 1.40045 1.08895 0.85879 0.80998 0.78849 0.78936 1.18972 1.20282 1.20614 1.19860 0.82551 0.81624 0.86582 1.90587 1.54015 1.73809 1.14547 1.23204 1.02748 1.00433 0.94066 1.22998 1.02218 1.00861 0.94606 0.92206 0.92500 0.90918 0.91415 0.90368 0.91967 0.73925 0.91837 0.87960 0.88679 0.88761 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.90 37.16 0.33 -1.63 16 2 C -0.11 -1.78 2.21 -154.51 -0.34 -2.12 16 3 C 0.15 2.85 1.09 -132.09 -0.14 2.71 16 4 C -0.14 -2.28 7.56 37.16 0.28 -2.00 16 5 N -0.74 -14.04 5.84 -52.94 -0.31 -14.35 16 6 C 0.68 16.81 8.57 -88.03 -0.75 16.06 16 7 O -0.57 -15.79 17.62 5.35 0.09 -15.69 16 8 N -0.41 -10.95 2.69 -65.57 -0.18 -11.12 16 9 C -0.35 -10.10 9.46 -14.76 -0.14 -10.24 16 10 H 0.10 2.93 7.91 -52.49 -0.41 2.51 16 11 C 0.06 1.60 4.82 -17.50 -0.08 1.52 16 12 N -0.83 -23.90 11.20 55.49 0.62 -23.28 16 13 Si 0.93 21.41 29.60 -169.99 -5.03 16.38 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.51 12.54 4.83 -10.55 -0.05 12.49 16 18 O -0.46 -12.54 14.84 5.60 0.08 -12.45 16 19 C -0.17 -2.10 9.31 -26.69 -0.25 -2.35 16 20 C -0.17 -2.01 9.60 -26.69 -0.26 -2.26 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 22 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 23 H 0.07 1.38 6.94 -51.93 -0.36 1.02 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.24 6.97 -51.93 -0.36 0.87 16 26 H 0.06 0.79 7.41 -51.93 -0.38 0.40 16 27 H 0.42 6.51 8.96 -40.82 -0.37 6.15 16 28 H 0.27 7.37 8.31 -40.81 -0.34 7.03 16 29 H 0.10 1.21 5.93 -51.93 -0.31 0.90 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.99 7.77 -51.93 -0.40 0.59 16 LS Contribution 270.33 15.07 4.07 4.07 Total: -1.00 -33.30 270.33 -5.90 -39.20 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.85 Total: 5.08 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -1.41 Total: 12.17 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.14 Total: -48.75 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.18 Total: -28.15 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.30 -5.90 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284299371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.595 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds