Wall clock time and date at job start Sun Mar 29 2020 22:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 115.54848 * 2 1 4 4 C 1.52998 * 110.53114 * 153.03751 * 3 2 1 5 5 N 1.47307 * 110.60144 * 275.87126 * 3 2 1 6 6 C 1.34523 * 106.62033 * 118.53005 * 5 3 2 7 7 O 1.21520 * 123.76990 * 180.02562 * 6 5 3 8 8 N 1.33786 * 112.45846 * 0.26274 * 6 5 3 9 9 C 1.37512 * 124.17625 * 179.69370 * 8 6 5 10 10 H 1.07992 * 120.00032 * 32.78611 * 9 8 6 11 11 C 1.38898 * 119.99936 * 212.77860 * 9 8 6 12 12 N 1.31383 * 119.99789 * 19.87659 * 11 9 8 13 13 Si 1.86806 * 120.00086 * 199.86958 * 11 9 8 14 14 H 1.48495 * 109.46821 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46809 * 120.00397 * 13 11 9 16 16 H 1.48497 * 109.46932 * 240.00387 * 13 11 9 17 17 C 1.34766 * 111.64506 * 359.54231 * 8 6 5 18 18 O 1.21235 * 127.15912 * 180.14427 * 17 8 6 19 19 C 1.52995 * 117.49531 * 145.66795 * 2 1 3 20 20 C 1.53000 * 117.49962 * 214.32944 * 2 1 3 21 21 H 1.09003 * 109.47139 * 59.99957 * 1 2 3 22 22 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47186 * 299.99994 * 1 2 3 24 24 H 1.09000 * 109.47027 * 182.13080 * 4 3 2 25 25 H 1.09000 * 109.47784 * 302.12734 * 4 3 2 26 26 H 1.08998 * 109.47197 * 62.13355 * 4 3 2 27 27 H 0.97003 * 126.68305 * 298.50612 * 5 3 2 28 28 H 0.97012 * 119.99802 * 179.97438 * 12 11 9 29 29 H 1.09005 * 117.50069 * 214.99860 * 19 2 1 30 30 H 1.08992 * 117.50442 * 0.02859 * 19 2 1 31 31 H 1.09001 * 117.49532 * 359.97438 * 20 2 1 32 32 H 1.08999 * 117.49525 * 144.97659 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 3.5735 1.3138 0.6496 5 7 2.2862 1.9089 -1.3716 6 6 1.5635 3.0432 -1.3986 7 8 1.4311 3.7365 -2.3878 8 7 1.0109 3.3254 -0.2133 9 6 0.2296 4.4303 0.0313 10 1 -0.4007 4.8295 -0.7494 11 6 0.2511 5.0327 1.2827 12 7 1.2617 4.8227 2.0956 13 14 -1.1567 6.1418 1.8097 14 1 -2.1642 6.2138 0.7212 15 1 -1.7900 5.5896 3.0341 16 1 -0.6351 7.5030 2.0929 17 6 1.3117 2.3914 0.7104 18 8 0.9583 2.3676 1.8699 19 6 2.2364 -1.1207 0.7654 20 6 2.2365 -1.1207 -0.7654 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 4.0116 2.3116 0.6747 25 1 3.4796 0.9327 1.6665 26 1 4.2152 0.6497 0.0706 27 1 2.7756 1.5157 -2.1111 28 1 1.2769 5.2438 2.9694 29 1 3.1713 -0.8747 1.2689 30 1 1.6112 -1.8582 1.2685 31 1 1.6112 -1.8583 -1.2685 32 1 3.1712 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284299371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:07 Heat of formation + Delta-G solvation = -34.925113 kcal Electronic energy + Delta-G solvation = -18106.424999 eV Core-core repulsion = 15261.167658 eV Total energy + Delta-G solvation = -2845.257341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.17626 -39.53164 -38.71972 -36.47413 -35.71331 -33.52241 -31.06650 -29.77587 -27.70625 -25.46884 -23.32782 -23.25263 -22.40438 -20.02303 -19.36289 -18.04016 -17.69055 -17.30669 -16.36649 -16.19692 -15.93942 -15.67953 -15.13385 -14.72748 -14.30473 -13.91793 -13.61189 -13.50797 -13.33809 -13.11291 -12.91248 -12.83606 -12.48741 -12.17827 -12.02197 -11.66469 -11.37486 -11.29505 -10.73233 -10.54495 -10.27949 -9.92188 -8.51605 -6.34184 1.14623 1.34908 1.39452 1.52440 1.87646 2.30574 2.47323 2.75342 2.89817 3.13448 3.40527 3.66321 3.86598 3.87757 4.15645 4.30871 4.61470 4.65106 4.79659 4.84462 4.87505 4.95595 5.02098 5.04734 5.21459 5.26781 5.31686 5.35072 5.88873 6.04911 6.35664 6.71480 7.17507 7.24261 7.85566 8.59106 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.009890 C = 0.008982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.874100 B = 2830.361777 C = 3116.592360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.154 4.154 3 C 0.163 3.837 4 C -0.136 4.136 5 N -0.707 5.707 6 C 0.669 3.331 7 O -0.612 6.612 8 N -0.433 5.433 9 C -0.387 4.387 10 H 0.087 0.913 11 C 0.014 3.986 12 N -0.859 5.859 13 Si 0.996 3.004 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.266 1.266 17 C 0.498 3.502 18 O -0.496 6.496 19 C -0.153 4.153 20 C -0.137 4.137 21 H 0.037 0.963 22 H 0.090 0.910 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.440 0.560 28 H 0.274 0.726 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -13.114 -1.715 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.155 4.155 3 C 0.072 3.928 4 C -0.194 4.194 5 N -0.372 5.372 6 C 0.372 3.628 7 O -0.493 6.493 8 N -0.165 5.165 9 C -0.512 4.512 10 H 0.105 0.895 11 C -0.194 4.194 12 N -0.493 5.493 13 Si 0.817 3.183 14 H -0.183 1.183 15 H -0.198 1.198 16 H -0.191 1.191 17 C 0.287 3.713 18 O -0.369 6.369 19 C -0.190 4.190 20 C -0.174 4.174 21 H 0.056 0.944 22 H 0.109 0.891 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.285 0.715 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.566 -12.639 -1.371 13.203 hybrid contribution -0.468 0.987 -0.020 1.092 sum 3.099 -11.652 -1.391 12.137 Atomic orbital electron populations 1.21279 0.92804 1.02725 1.00225 1.21298 0.94534 0.88015 1.11702 1.20841 0.97312 0.92780 0.81827 1.21998 0.92456 1.02837 1.02061 1.45383 1.54040 1.24717 1.13081 1.16578 0.79333 0.82565 0.84289 1.90757 1.67491 1.55446 1.35650 1.42137 1.42832 1.21522 1.10033 1.19518 1.23008 1.08490 1.00222 0.89471 1.26285 0.99264 0.98080 0.95784 1.69998 1.28790 1.41263 1.09201 0.84885 0.77717 0.77245 0.78477 1.18260 1.19834 1.19114 1.20831 0.82290 0.82077 0.86095 1.90535 1.55417 1.74902 1.16010 1.23372 1.02559 0.98022 0.95089 1.23184 1.02166 0.97640 0.94415 0.94418 0.89101 0.94727 0.93933 0.89737 0.87107 0.71459 0.91614 0.86859 0.87293 0.86811 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.64 8.90 71.98 0.64 -3.00 16 2 C -0.15 -4.40 2.21 -52.18 -0.12 -4.52 16 3 C 0.16 5.90 1.09 2.99 0.00 5.90 16 4 C -0.14 -4.06 7.56 71.98 0.54 -3.52 16 5 N -0.71 -26.15 5.84 -439.85 -2.57 -28.72 16 6 C 0.67 33.96 8.57 179.44 1.54 35.50 16 7 O -0.61 -34.67 17.62 -3.78 -0.07 -34.74 16 8 N -0.43 -24.08 2.69 -598.62 -1.61 -25.70 16 9 C -0.39 -23.22 9.46 83.96 0.79 -22.42 16 10 H 0.09 5.30 7.91 -2.91 -0.02 5.28 16 11 C 0.01 0.78 4.82 84.92 0.41 1.19 16 12 N -0.86 -51.11 11.20 21.65 0.24 -50.86 16 13 Si 1.00 44.99 29.60 68.60 2.03 47.02 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 C 0.50 25.22 4.83 87.94 0.42 25.64 16 18 O -0.50 -28.02 14.84 -2.89 -0.04 -28.06 16 19 C -0.15 -3.13 9.31 30.62 0.29 -2.85 16 20 C -0.14 -2.50 9.60 30.62 0.29 -2.21 16 21 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 22 H 0.09 2.22 8.11 -2.39 -0.02 2.20 16 23 H 0.03 1.34 6.94 -2.39 -0.02 1.32 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 2.46 6.97 -2.39 -0.02 2.44 16 26 H 0.11 2.24 7.41 -2.39 -0.02 2.22 16 27 H 0.44 12.50 8.96 -92.71 -0.83 11.67 16 28 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 29 H 0.11 2.10 5.93 -2.38 -0.01 2.09 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 1.66 7.77 -2.39 -0.02 1.64 16 Total: -1.00 -77.23 270.33 3.12 -74.11 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.32 Total: 17.24 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 4.82 Total: 29.72 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.94 Total: -105.28 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.11 Total: -62.80 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.23 3.12 -74.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284299371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.186 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds