Wall clock time and date at job start Sun Mar 29 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34269 * 126.53399 * 2 1 4 4 C 1.34051 * 108.23301 * 180.26920 * 3 2 1 5 5 C 1.50700 * 125.37327 * 179.75374 * 4 3 2 6 6 C 1.52998 * 109.46743 * 120.00008 * 5 4 3 7 7 C 1.52991 * 109.47177 * 240.00117 * 5 4 3 8 8 N 1.29938 * 109.25893 * 359.73630 * 4 3 2 9 9 C 1.36072 * 108.48793 * 359.97438 * 8 4 3 10 10 C 1.47326 * 126.46143 * 180.02562 * 9 8 4 11 11 O 1.21638 * 120.00503 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99565 * 0.02562 * 10 9 8 13 13 C 1.36945 * 119.99991 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99882 * 359.97438 * 13 12 10 15 15 C 1.38990 * 120.00021 * 179.73060 * 13 12 10 16 16 N 1.31398 * 119.99997 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47184 * 59.99991 * 17 15 13 19 19 H 1.48505 * 109.46859 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47384 * 299.99792 * 17 15 13 21 21 H 1.09001 * 109.47008 * 270.18131 * 1 2 3 22 22 H 1.09004 * 109.47003 * 30.18198 * 1 2 3 23 23 H 1.08997 * 109.47286 * 150.17985 * 1 2 3 24 24 H 1.09005 * 109.46760 * 0.02562 * 5 4 3 25 25 H 1.08999 * 109.47773 * 300.00303 * 6 5 4 26 26 H 1.09005 * 109.47103 * 60.00687 * 6 5 4 27 27 H 1.09006 * 109.46803 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47240 * 60.00548 * 7 5 4 29 29 H 1.09006 * 109.47001 * 179.97438 * 7 5 4 30 30 H 1.08991 * 109.47503 * 299.99987 * 7 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 32 32 H 0.97004 * 120.00263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3063 1.0789 0.0000 4 6 3.5790 0.6579 -0.0060 5 6 4.7931 1.5507 -0.0134 6 6 5.6376 1.2732 1.2319 7 6 5.6248 1.2701 -1.2665 8 7 3.6007 -0.6413 -0.0041 9 6 2.3177 -1.0943 0.0039 10 6 1.8866 -2.5030 0.0091 11 8 0.7013 -2.7765 0.0158 12 7 2.8056 -3.4889 0.0066 13 6 2.4050 -4.7984 0.0109 14 1 1.3526 -5.0412 0.0167 15 6 3.3526 -5.8151 0.0025 16 7 4.6329 -5.5198 -0.0100 17 14 2.8061 -7.6014 0.0091 18 1 1.9802 -7.8708 -1.1954 19 1 4.0001 -8.4843 -0.0023 20 1 2.0036 -7.8691 1.2296 21 1 -0.3633 0.0033 1.0277 22 1 -0.3633 0.8884 -0.5167 23 1 -0.3634 -0.8916 -0.5110 24 1 4.4770 2.5939 -0.0126 25 1 5.0451 1.4730 2.1248 26 1 5.9537 0.2300 1.2316 27 1 6.5155 1.9193 1.2269 28 1 5.0232 1.4678 -2.1536 29 1 6.5027 1.9162 -1.2720 30 1 5.9408 0.2271 -1.2668 31 1 3.7508 -3.2709 0.0017 32 1 5.2944 -6.2293 -0.0161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285893176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:54 Heat of formation + Delta-G solvation = -36.123239 kcal Electronic energy + Delta-G solvation = -16777.478417 eV Core-core repulsion = 13932.169122 eV Total energy + Delta-G solvation = -2845.309295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.87239 -37.94453 -35.80075 -34.09384 -33.89381 -31.49150 -31.11142 -27.19656 -26.87798 -25.15188 -23.46167 -21.70772 -20.18587 -19.29267 -17.93393 -16.87907 -16.42463 -15.28456 -14.71927 -14.53286 -14.37038 -13.86783 -13.42808 -13.17279 -13.09331 -12.62610 -12.50930 -12.16759 -12.05448 -11.65965 -11.57197 -11.30490 -11.12500 -11.02434 -10.60375 -10.46495 -10.30080 -10.08109 -9.55196 -8.58298 -8.21253 -7.99546 -6.48583 -3.84278 1.70745 2.68821 2.90523 3.23306 3.23524 3.27960 4.10147 4.23894 4.35123 4.81143 4.95561 5.02922 5.15416 5.30516 5.33481 5.56908 5.60570 5.74666 5.82799 5.83223 5.85267 5.99611 6.13145 6.22831 6.27040 6.39881 6.51443 6.83460 7.47940 7.94813 8.11814 8.58620 9.09498 9.51574 10.03697 10.67681 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.006872 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.403903 B = 4073.375963 C = 4945.708318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.007 4.007 3 O -0.207 6.207 4 C 0.176 3.824 5 C 0.010 3.990 6 C -0.144 4.144 7 C -0.144 4.144 8 N -0.451 5.451 9 C -0.031 4.031 10 C 0.503 3.497 11 O -0.597 6.597 12 N -0.527 5.527 13 C -0.300 4.300 14 H 0.107 0.893 15 C 0.025 3.975 16 N -0.884 5.884 17 Si 0.936 3.064 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.403 0.597 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 13.171 -0.081 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.063 4.063 3 O -0.095 6.095 4 C -0.033 4.033 5 C -0.009 4.009 6 C -0.202 4.202 7 C -0.202 4.202 8 N -0.182 5.182 9 C -0.152 4.152 10 C 0.289 3.711 11 O -0.484 6.484 12 N -0.160 5.160 13 C -0.430 4.430 14 H 0.125 0.875 15 C -0.179 4.179 16 N -0.524 5.524 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.099 0.901 22 H 0.086 0.914 23 H 0.131 0.869 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.238 0.762 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.590 12.475 -0.081 12.576 hybrid contribution -0.167 -0.314 0.026 0.356 sum 1.423 12.161 -0.055 12.244 Atomic orbital electron populations 1.20401 0.83153 1.04501 1.03783 1.23517 0.94767 0.83284 1.04685 1.84212 1.17906 1.36709 1.70694 1.26062 0.83856 0.90756 1.02583 1.19543 0.87192 0.96090 0.98111 1.21851 0.99073 1.03663 0.95623 1.21846 0.99165 1.03656 0.95531 1.70749 1.22482 1.08419 1.16508 1.22065 0.87689 0.96847 1.08625 1.16296 0.86120 0.81780 0.86913 1.90575 1.16249 1.82464 1.59136 1.41780 1.09028 1.05213 1.59969 1.19791 0.95056 0.80691 1.47502 0.87473 1.25409 0.94782 1.00973 0.96698 1.69646 1.00177 1.34630 1.47921 0.85841 0.77917 0.80781 0.79245 1.19661 1.20792 1.19654 0.90092 0.91443 0.86948 0.88999 0.92415 0.90804 0.91320 0.92409 0.91318 0.90803 0.76237 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 9.87 36.01 0.36 -0.63 16 2 C -0.01 -0.14 7.44 -35.05 -0.26 -0.40 16 3 O -0.21 -3.68 10.73 6.47 0.07 -3.61 16 4 C 0.18 3.04 6.81 -13.08 -0.09 2.95 16 5 C 0.01 0.12 3.39 -91.78 -0.31 -0.19 16 6 C -0.14 -1.62 9.17 37.16 0.34 -1.28 16 7 C -0.14 -1.62 9.17 37.15 0.34 -1.28 16 8 N -0.45 -9.44 11.05 -7.66 -0.08 -9.53 16 9 C -0.03 -0.71 6.99 -83.03 -0.58 -1.30 16 10 C 0.50 13.28 7.76 -12.56 -0.10 13.19 16 11 O -0.60 -16.60 14.38 5.24 0.08 -16.52 16 12 N -0.53 -14.63 5.28 -11.98 -0.06 -14.69 16 13 C -0.30 -8.62 9.68 -14.99 -0.15 -8.76 16 14 H 0.11 3.13 7.15 -52.48 -0.38 2.75 16 15 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 16 N -0.88 -24.60 13.05 55.50 0.72 -23.88 16 17 Si 0.94 21.00 29.55 -169.99 -5.02 15.97 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.11 2.02 6.49 -51.93 -0.34 1.68 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.40 11.16 7.62 -40.82 -0.31 10.85 16 32 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -31.88 284.02 -4.53 -36.41 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.96 Total: 8.68 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.54 Total: 2.88 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.58 Total: -48.09 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.14 Total: -20.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.88 -4.53 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285893176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.286 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds