Wall clock time and date at job start Sun Mar 29 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34269 * 126.53399 * 2 1 4 4 C 1.34051 * 108.23301 * 180.26920 * 3 2 1 5 5 C 1.50700 * 125.37327 * 179.75374 * 4 3 2 6 6 C 1.52998 * 109.46743 * 120.00008 * 5 4 3 7 7 C 1.52991 * 109.47177 * 240.00117 * 5 4 3 8 8 N 1.29938 * 109.25893 * 359.73630 * 4 3 2 9 9 C 1.36072 * 108.48793 * 359.97438 * 8 4 3 10 10 C 1.47326 * 126.46143 * 180.02562 * 9 8 4 11 11 O 1.21638 * 120.00503 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99565 * 0.02562 * 10 9 8 13 13 C 1.36945 * 119.99991 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99882 * 359.97438 * 13 12 10 15 15 C 1.38990 * 120.00021 * 179.73060 * 13 12 10 16 16 N 1.31398 * 119.99997 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99803 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.47184 * 59.99991 * 17 15 13 19 19 H 1.48505 * 109.46859 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47384 * 299.99792 * 17 15 13 21 21 H 1.09001 * 109.47008 * 270.18131 * 1 2 3 22 22 H 1.09004 * 109.47003 * 30.18198 * 1 2 3 23 23 H 1.08997 * 109.47286 * 150.17985 * 1 2 3 24 24 H 1.09005 * 109.46760 * 0.02562 * 5 4 3 25 25 H 1.08999 * 109.47773 * 300.00303 * 6 5 4 26 26 H 1.09005 * 109.47103 * 60.00687 * 6 5 4 27 27 H 1.09006 * 109.46803 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47240 * 60.00548 * 7 5 4 29 29 H 1.09006 * 109.47001 * 179.97438 * 7 5 4 30 30 H 1.08991 * 109.47503 * 299.99987 * 7 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 32 32 H 0.97004 * 120.00263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3063 1.0789 0.0000 4 6 3.5790 0.6579 -0.0060 5 6 4.7931 1.5507 -0.0134 6 6 5.6376 1.2732 1.2319 7 6 5.6248 1.2701 -1.2665 8 7 3.6007 -0.6413 -0.0041 9 6 2.3177 -1.0943 0.0039 10 6 1.8866 -2.5030 0.0091 11 8 0.7013 -2.7765 0.0158 12 7 2.8056 -3.4889 0.0066 13 6 2.4050 -4.7984 0.0109 14 1 1.3526 -5.0412 0.0167 15 6 3.3526 -5.8151 0.0025 16 7 4.6329 -5.5198 -0.0100 17 14 2.8061 -7.6014 0.0091 18 1 1.9802 -7.8708 -1.1954 19 1 4.0001 -8.4843 -0.0023 20 1 2.0036 -7.8691 1.2296 21 1 -0.3633 0.0033 1.0277 22 1 -0.3633 0.8884 -0.5167 23 1 -0.3634 -0.8916 -0.5110 24 1 4.4770 2.5939 -0.0126 25 1 5.0451 1.4730 2.1248 26 1 5.9537 0.2300 1.2316 27 1 6.5155 1.9193 1.2269 28 1 5.0232 1.4678 -2.1536 29 1 6.5027 1.9162 -1.2720 30 1 5.9408 0.2271 -1.2668 31 1 3.7508 -3.2709 0.0017 32 1 5.2944 -6.2293 -0.0161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285893176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:54 Heat of formation + Delta-G solvation = -60.394725 kcal Electronic energy + Delta-G solvation = -16778.530908 eV Core-core repulsion = 13932.169122 eV Total energy + Delta-G solvation = -2846.361786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.38511 -40.00177 -36.91138 -36.13945 -35.46172 -33.36162 -32.76389 -28.51062 -28.08471 -26.97842 -25.03167 -23.20589 -21.64061 -20.97283 -19.96344 -18.63980 -17.91828 -17.02247 -16.47474 -16.06024 -15.65075 -15.41703 -15.37546 -14.75559 -14.34506 -14.26729 -13.73222 -13.55136 -13.35138 -13.07802 -12.97248 -12.65138 -12.51917 -12.34392 -12.13229 -12.06876 -12.00550 -11.61825 -11.57997 -10.65131 -10.15865 -9.72940 -8.55762 -6.03804 0.14934 1.08519 1.39619 1.47558 1.49657 1.53551 2.24765 2.39005 2.80036 3.17716 3.22088 3.69700 3.96378 4.07327 4.08779 4.23350 4.37483 4.54250 4.61068 4.79925 4.82323 4.92309 4.93473 4.99773 5.19259 5.20700 5.32848 5.33127 5.40824 5.86862 6.39674 6.63096 6.97159 7.40699 7.92977 8.61387 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.006872 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.403903 B = 4073.375963 C = 4945.708318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.016 3.984 3 O -0.196 6.196 4 C 0.192 3.808 5 C 0.009 3.991 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.486 5.486 9 C -0.081 4.081 10 C 0.503 3.497 11 O -0.618 6.618 12 N -0.542 5.542 13 C -0.342 4.342 14 H 0.092 0.908 15 C -0.013 4.013 16 N -0.912 5.912 17 Si 1.007 2.993 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.266 1.266 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.398 0.602 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 14.966 -0.053 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.041 4.041 3 O -0.084 6.084 4 C -0.018 4.018 5 C -0.010 4.010 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.215 5.215 9 C -0.201 4.201 10 C 0.290 3.710 11 O -0.507 6.507 12 N -0.175 5.175 13 C -0.471 4.471 14 H 0.110 0.890 15 C -0.214 4.214 16 N -0.551 5.551 17 Si 0.828 3.172 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.191 1.191 21 H 0.116 0.884 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.147 0.853 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.233 0.767 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.915 14.275 -0.053 14.403 hybrid contribution -0.248 -0.667 0.015 0.712 sum 1.667 13.607 -0.037 13.709 Atomic orbital electron populations 1.20529 0.80765 1.05376 1.05099 1.24031 0.96056 0.82728 1.01236 1.84275 1.18026 1.35678 1.70432 1.27249 0.84830 0.90381 0.99292 1.20008 0.85223 0.96858 0.98940 1.21859 1.00261 1.02757 0.95030 1.21854 1.00362 1.02751 0.94927 1.70686 1.21921 1.10480 1.18437 1.21677 0.89546 0.95745 1.13085 1.16836 0.85740 0.83238 0.85157 1.90530 1.17003 1.83559 1.59636 1.41833 1.08896 1.05454 1.61326 1.19880 0.94863 0.81849 1.50505 0.89013 1.26360 0.94598 1.05167 0.95258 1.69729 1.01120 1.36289 1.47980 0.84801 0.77992 0.74983 0.79383 1.19119 1.19187 1.19100 0.88400 0.87293 0.89211 0.85255 0.92551 0.93633 0.87590 0.92538 0.87587 0.93633 0.76745 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 9.87 71.24 0.70 -1.16 16 2 C 0.02 0.61 7.44 25.21 0.19 0.80 16 3 O -0.20 -6.53 10.73 0.25 0.00 -6.53 16 4 C 0.19 6.38 6.81 88.39 0.60 6.98 16 5 C 0.01 0.19 3.39 -11.54 -0.04 0.15 16 6 C -0.14 -2.85 9.17 71.98 0.66 -2.19 16 7 C -0.14 -2.84 9.17 71.98 0.66 -2.18 16 8 N -0.49 -20.67 11.05 -293.05 -3.24 -23.91 16 9 C -0.08 -3.79 6.99 40.40 0.28 -3.51 16 10 C 0.50 27.74 7.76 86.63 0.67 28.41 16 11 O -0.62 -35.76 14.38 -4.15 -0.06 -35.82 16 12 N -0.54 -31.65 5.28 -310.06 -1.64 -33.29 16 13 C -0.34 -20.46 9.68 84.08 0.81 -19.64 16 14 H 0.09 5.63 7.15 -2.91 -0.02 5.61 16 15 C -0.01 -0.70 5.50 84.94 0.47 -0.23 16 16 N -0.91 -51.82 13.05 21.67 0.28 -51.54 16 17 Si 1.01 43.43 29.55 68.60 2.03 45.46 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 22 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 23 H 0.09 3.21 6.49 -2.39 -0.02 3.20 16 24 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.40 23.36 7.62 -92.70 -0.71 22.65 16 32 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -72.42 284.02 2.82 -69.59 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.43 Total: 28.61 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.01 Total: 7.42 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.59 Total: -108.74 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.06 Total: -42.35 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.42 2.82 -69.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285893176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.199 kcal (2) G-P(sol) polarization free energy of solvation -72.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds