Wall clock time and date at job start Sun Mar 29 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30162 * 126.81216 * 2 1 4 4 O 1.20898 * 111.74921 * 180.24946 * 3 2 1 5 5 C 1.34260 * 111.63647 * 359.74702 * 4 3 2 6 6 C 1.50705 * 126.82314 * 179.97438 * 5 4 3 7 7 C 1.35888 * 106.35690 * 359.97438 * 5 4 3 8 8 N 1.40694 * 128.05995 * 179.97438 * 7 5 4 9 9 C 1.34778 * 120.00260 * 117.02136 * 8 7 5 10 10 O 1.21304 * 119.99598 * 357.54641 * 9 8 7 11 11 C 1.50698 * 120.00285 * 177.82323 * 9 8 7 12 12 C 1.52999 * 109.47168 * 179.72877 * 11 9 8 13 13 C 1.50698 * 109.47168 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00073 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00168 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00344 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00075 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47501 * 89.99604 * 17 15 13 19 19 H 1.48498 * 109.47518 * 210.00185 * 17 15 13 20 20 H 1.48504 * 109.46957 * 329.99609 * 17 15 13 21 21 H 1.09000 * 109.47116 * 276.86438 * 1 2 3 22 22 H 1.08999 * 109.46780 * 36.86349 * 1 2 3 23 23 H 1.09003 * 109.47147 * 156.85598 * 1 2 3 24 24 H 1.09000 * 109.46884 * 270.00174 * 6 5 4 25 25 H 1.09001 * 109.46523 * 29.99645 * 6 5 4 26 26 H 1.08994 * 109.47146 * 149.99727 * 6 5 4 27 27 H 0.97003 * 119.99914 * 297.02221 * 8 7 5 28 28 H 1.09006 * 109.46818 * 299.72330 * 11 9 8 29 29 H 1.09000 * 109.47439 * 59.72019 * 11 9 8 30 30 H 1.09006 * 109.46804 * 299.99461 * 12 11 9 31 31 H 1.08991 * 109.47624 * 59.99374 * 12 11 9 32 32 H 0.96996 * 119.99912 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0421 0.0000 4 8 3.4544 0.7279 -0.0049 5 6 3.6081 -0.6059 -0.0034 6 6 4.9100 -1.3651 -0.0087 7 6 2.3566 -1.1353 0.0039 8 7 1.9895 -2.4935 0.0075 9 6 1.3071 -3.0043 1.0516 10 8 1.0484 -2.3043 2.0079 11 6 0.8711 -4.4467 1.0336 12 6 0.1271 -4.7708 2.3307 13 6 -0.3094 -6.2130 2.3125 14 1 -0.0797 -6.8361 1.4608 15 6 -1.0022 -6.7372 3.3831 16 7 -1.3837 -7.9957 3.3670 17 14 -1.4003 -5.6594 4.8560 18 1 -2.7146 -5.0008 4.6467 19 1 -1.4555 -6.4964 6.0814 20 1 -0.3469 -4.6242 5.0109 21 1 -0.3633 0.1228 1.0203 22 1 -0.3633 0.8222 -0.6165 23 1 -0.3633 -0.9450 -0.4039 24 1 5.2186 -1.5498 -1.0376 25 1 5.6747 -0.7783 0.5002 26 1 4.7781 -2.3160 0.5074 27 1 2.2274 -3.0623 -0.7413 28 1 0.2099 -4.6159 0.1836 29 1 1.7467 -5.0900 0.9464 30 1 0.7883 -4.6017 3.1807 31 1 -0.7484 -4.1276 2.4179 32 1 -1.8714 -8.3643 4.1201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291814594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:36 Heat of formation + Delta-G solvation = 9.399202 kcal Electronic energy + Delta-G solvation = -16602.841053 eV Core-core repulsion = 13759.505759 eV Total energy + Delta-G solvation = -2843.335294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.96073 -39.52813 -35.72599 -33.96931 -33.56235 -32.42442 -31.23138 -28.68259 -27.80148 -26.22686 -23.10792 -21.20198 -20.52470 -19.83027 -17.87101 -17.58273 -17.24051 -16.05893 -15.86761 -15.19606 -14.20063 -14.13886 -13.62644 -13.54346 -13.27241 -13.18094 -12.83341 -12.63666 -12.60429 -12.43765 -11.50462 -11.37010 -11.02259 -10.29002 -10.20162 -10.13031 -9.85168 -9.64883 -9.45809 -9.25071 -8.81802 -8.55674 -6.07938 -4.07369 1.30831 2.08179 2.75804 2.91179 3.34186 3.39587 3.41590 3.51400 4.24463 4.33928 4.46317 4.91644 5.06082 5.16394 5.23432 5.27505 5.38771 5.51113 5.57594 5.63333 5.77097 5.94130 5.96925 6.05087 6.55759 6.57556 7.27675 7.34543 7.48165 7.72198 8.19192 8.39598 8.48953 8.94464 9.54819 11.04756 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.005378 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.837213 B = 5205.413916 C = 5472.926187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.034 3.966 3 N -0.364 5.364 4 O 0.099 5.901 5 C -0.044 4.044 6 C -0.070 4.070 7 C 0.036 3.964 8 N -0.660 5.660 9 C 0.512 3.488 10 O -0.519 6.519 11 C -0.118 4.118 12 C 0.001 3.999 13 C -0.527 4.527 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.902 5.902 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.411 0.589 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.024 0.976 31 H 0.020 0.980 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 12.786 -9.999 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 N -0.072 5.072 4 O 0.037 5.963 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.061 4.061 8 N -0.313 5.313 9 C 0.302 3.698 10 O -0.392 6.392 11 C -0.158 4.158 12 C -0.037 4.037 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.186 1.186 21 H 0.103 0.897 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.248 0.752 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.760 14.446 -9.159 19.693 hybrid contribution -0.269 -0.635 0.425 0.811 sum 9.490 13.810 -8.733 18.896 Atomic orbital electron populations 1.20134 0.85708 1.03306 1.03818 1.23580 0.99160 0.88430 1.01536 1.73800 0.89196 1.23418 1.20800 1.84842 1.21489 1.21560 1.68361 1.24297 0.97962 0.84315 1.04424 1.20305 0.89739 0.98793 1.03878 1.18015 0.90784 0.87023 1.10316 1.43108 1.59234 1.05590 1.23413 1.21886 0.75836 0.91362 0.80759 1.90696 1.53636 1.61793 1.33078 1.21689 1.02074 0.88302 1.03718 1.19388 0.95524 0.97214 0.91537 1.21072 1.36198 0.94090 1.05087 0.90844 1.24956 0.95030 0.94826 0.98289 1.69904 1.39106 1.13285 1.31771 0.86817 0.79630 0.80912 0.82326 1.20203 1.21374 1.18573 0.89693 0.90651 0.90305 0.89434 0.89657 0.89056 0.75179 0.89152 0.89165 0.95756 0.96188 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.48 36.01 0.38 -0.58 16 2 C 0.03 0.51 7.17 -81.94 -0.59 -0.08 16 3 N -0.36 -5.53 12.06 33.56 0.40 -5.13 16 4 O 0.10 1.34 11.20 16.60 0.19 1.52 16 5 C -0.04 -0.53 7.51 -35.15 -0.26 -0.79 16 6 C -0.07 -0.52 10.45 36.01 0.38 -0.15 16 7 C 0.04 0.50 6.13 -83.27 -0.51 -0.01 16 8 N -0.66 -8.55 5.47 -9.64 -0.05 -8.60 16 9 C 0.51 8.78 7.80 -10.99 -0.09 8.69 16 10 O -0.52 -11.13 15.82 5.54 0.09 -11.04 16 11 C -0.12 -2.11 5.64 -27.88 -0.16 -2.27 16 12 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 13 C -0.53 -14.60 9.66 -34.44 -0.33 -14.94 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 17 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.41 3.79 8.83 -40.82 -0.36 3.43 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 31 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 285.32 15.07 4.30 4.30 Total: -1.00 -34.44 285.32 -4.44 -38.88 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.09 Total: -2.54 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.37 Total: -8.23 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 1.13 Total: -40.42 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.27 Total: -9.52 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.44 -4.44 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291814594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.277 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds