Wall clock time and date at job start Sun Mar 29 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30162 * 126.81216 * 2 1 4 4 O 1.20898 * 111.74921 * 180.24946 * 3 2 1 5 5 C 1.34260 * 111.63647 * 359.74702 * 4 3 2 6 6 C 1.50705 * 126.82314 * 179.97438 * 5 4 3 7 7 C 1.35888 * 106.35690 * 359.97438 * 5 4 3 8 8 N 1.40694 * 128.05995 * 179.97438 * 7 5 4 9 9 C 1.34778 * 120.00260 * 117.02136 * 8 7 5 10 10 O 1.21304 * 119.99598 * 357.54641 * 9 8 7 11 11 C 1.50698 * 120.00285 * 177.82323 * 9 8 7 12 12 C 1.52999 * 109.47168 * 179.72877 * 11 9 8 13 13 C 1.50698 * 109.47168 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00073 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00168 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00344 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00075 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47501 * 89.99604 * 17 15 13 19 19 H 1.48498 * 109.47518 * 210.00185 * 17 15 13 20 20 H 1.48504 * 109.46957 * 329.99609 * 17 15 13 21 21 H 1.09000 * 109.47116 * 276.86438 * 1 2 3 22 22 H 1.08999 * 109.46780 * 36.86349 * 1 2 3 23 23 H 1.09003 * 109.47147 * 156.85598 * 1 2 3 24 24 H 1.09000 * 109.46884 * 270.00174 * 6 5 4 25 25 H 1.09001 * 109.46523 * 29.99645 * 6 5 4 26 26 H 1.08994 * 109.47146 * 149.99727 * 6 5 4 27 27 H 0.97003 * 119.99914 * 297.02221 * 8 7 5 28 28 H 1.09006 * 109.46818 * 299.72330 * 11 9 8 29 29 H 1.09000 * 109.47439 * 59.72019 * 11 9 8 30 30 H 1.09006 * 109.46804 * 299.99461 * 12 11 9 31 31 H 1.08991 * 109.47624 * 59.99374 * 12 11 9 32 32 H 0.96996 * 119.99912 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0421 0.0000 4 8 3.4544 0.7279 -0.0049 5 6 3.6081 -0.6059 -0.0034 6 6 4.9100 -1.3651 -0.0087 7 6 2.3566 -1.1353 0.0039 8 7 1.9895 -2.4935 0.0075 9 6 1.3071 -3.0043 1.0516 10 8 1.0484 -2.3043 2.0079 11 6 0.8711 -4.4467 1.0336 12 6 0.1271 -4.7708 2.3307 13 6 -0.3094 -6.2130 2.3125 14 1 -0.0797 -6.8361 1.4608 15 6 -1.0022 -6.7372 3.3831 16 7 -1.3837 -7.9957 3.3670 17 14 -1.4003 -5.6594 4.8560 18 1 -2.7146 -5.0008 4.6467 19 1 -1.4555 -6.4964 6.0814 20 1 -0.3469 -4.6242 5.0109 21 1 -0.3633 0.1228 1.0203 22 1 -0.3633 0.8222 -0.6165 23 1 -0.3633 -0.9450 -0.4039 24 1 5.2186 -1.5498 -1.0376 25 1 5.6747 -0.7783 0.5002 26 1 4.7781 -2.3160 0.5074 27 1 2.2274 -3.0623 -0.7413 28 1 0.2099 -4.6159 0.1836 29 1 1.7467 -5.0900 0.9464 30 1 0.7883 -4.6017 3.1807 31 1 -0.7484 -4.1276 2.4179 32 1 -1.8714 -8.3643 4.1201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291814594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:36 Heat of formation + Delta-G solvation = -14.895983 kcal Electronic energy + Delta-G solvation = -16603.894571 eV Core-core repulsion = 13759.505759 eV Total energy + Delta-G solvation = -2844.388812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.01932 -40.86919 -36.91732 -35.53156 -34.99885 -33.65628 -32.96149 -29.74261 -28.83128 -27.83830 -24.49397 -22.77548 -21.60328 -21.17888 -19.29082 -18.83359 -18.66913 -17.61341 -16.99562 -16.54337 -16.22516 -15.24123 -15.06742 -14.66889 -14.47901 -14.41595 -14.12301 -13.93474 -13.55367 -13.42009 -13.36050 -12.92528 -12.39273 -12.12878 -11.97559 -11.77261 -11.39480 -11.33697 -10.93510 -10.77481 -10.68743 -9.87938 -8.30631 -6.33018 0.33013 0.96754 1.32950 1.35975 1.49538 1.59183 1.75379 2.34931 2.37097 3.05694 3.20698 3.39638 3.87887 4.02113 4.26408 4.35676 4.45702 4.50071 4.51402 4.64008 4.69827 4.81340 4.97700 5.01896 5.12830 5.33972 5.44933 5.48069 5.62085 6.23772 6.39947 6.74118 7.16793 7.19605 7.32564 8.84927 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039436 B = 0.005378 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.837213 B = 5205.413916 C = 5472.926187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.016 3.984 3 N -0.386 5.386 4 O 0.097 5.903 5 C -0.022 4.022 6 C -0.071 4.071 7 C 0.004 3.996 8 N -0.633 5.633 9 C 0.521 3.479 10 O -0.567 6.567 11 C -0.110 4.110 12 C 0.003 3.997 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.016 3.984 16 N -0.943 5.943 17 Si 0.933 3.067 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.262 1.262 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.431 0.569 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 13.507 -10.833 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 N -0.096 5.096 4 O 0.037 5.963 5 C -0.088 4.088 6 C -0.128 4.128 7 C -0.093 4.093 8 N -0.287 5.287 9 C 0.311 3.689 10 O -0.444 6.444 11 C -0.150 4.150 12 C -0.035 4.035 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.182 4.182 16 N -0.584 5.584 17 Si 0.759 3.241 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.186 1.186 21 H 0.088 0.912 22 H 0.111 0.889 23 H 0.100 0.900 24 H 0.137 0.863 25 H 0.120 0.880 26 H 0.112 0.888 27 H 0.272 0.728 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.194 15.168 -10.048 21.362 hybrid contribution -0.619 -0.868 0.596 1.221 sum 10.576 14.300 -9.452 20.141 Atomic orbital electron populations 1.20142 0.85244 1.04215 1.03226 1.23914 0.99912 0.88969 1.01595 1.73785 0.89782 1.23971 1.22028 1.84819 1.20913 1.22489 1.68117 1.25047 0.99005 0.83615 1.01126 1.20596 0.87763 0.98299 1.06135 1.18145 0.91547 0.86863 1.12770 1.42628 1.57639 1.05631 1.22792 1.21557 0.75790 0.90644 0.80924 1.90688 1.55863 1.62674 1.35170 1.21495 1.02807 0.89493 1.01175 1.19245 0.95445 0.94456 0.94331 1.21416 1.35132 0.95743 1.04088 0.92726 1.25743 0.95394 0.95894 1.01154 1.70014 1.40553 1.14902 1.32908 0.85903 0.79465 0.79277 0.79498 1.19532 1.20566 1.18639 0.91225 0.88863 0.90034 0.86301 0.87994 0.88804 0.72789 0.87146 0.86926 0.97172 0.97292 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.85 10.48 71.24 0.75 -1.10 16 2 C 0.02 0.48 7.17 43.69 0.31 0.79 16 3 N -0.39 -11.39 12.06 -48.96 -0.59 -11.98 16 4 O 0.10 2.46 11.20 69.56 0.78 3.24 16 5 C -0.02 -0.47 7.51 25.14 0.19 -0.28 16 6 C -0.07 -0.79 10.45 71.24 0.74 -0.05 16 7 C 0.00 0.11 6.13 38.05 0.23 0.35 16 8 N -0.63 -14.85 5.47 -302.79 -1.66 -16.50 16 9 C 0.52 16.97 7.80 87.66 0.68 17.66 16 10 O -0.57 -23.96 15.82 -3.10 -0.05 -24.01 16 11 C -0.11 -3.72 5.64 29.85 0.17 -3.55 16 12 C 0.00 0.15 3.33 29.85 0.10 0.25 16 13 C -0.53 -29.10 9.66 25.60 0.25 -28.85 16 14 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 15 C 0.02 0.92 5.47 84.65 0.46 1.39 16 16 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 17 Si 0.93 45.89 27.47 68.60 1.88 47.78 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.43 6.51 8.83 -92.71 -0.82 5.69 16 28 H 0.11 3.30 8.14 -2.38 -0.02 3.29 16 29 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.01 0.50 7.16 -2.38 -0.02 0.48 16 31 H 0.01 0.43 7.53 -2.39 -0.02 0.41 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -74.80 285.32 4.82 -69.99 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 0.26 Total: 2.48 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.89 Total: -13.40 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.95 Total: -86.08 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.73 Total: -20.77 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -74.80 4.82 -69.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291814594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.091 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds