Wall clock time and date at job start Sun Mar 29 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37805 * 2 1 4 4 C 1.36067 * 108.47372 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99480 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00435 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99679 * 14 12 10 16 16 H 1.48498 * 109.47278 * 210.00109 * 14 12 10 17 17 H 1.48502 * 109.46821 * 330.00292 * 14 12 10 18 18 C 1.36084 * 107.10479 * 0.26712 * 4 3 2 19 19 C 1.50708 * 126.52553 * 179.73899 * 18 4 3 20 20 O 1.34057 * 125.37580 * 179.97438 * 2 1 3 21 21 H 1.09001 * 109.47001 * 89.99783 * 1 2 3 22 22 H 1.08995 * 109.47215 * 209.99768 * 1 2 3 23 23 H 1.08991 * 109.46906 * 329.99641 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 25 25 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 26 26 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 27 27 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 28 28 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 29 29 H 0.97004 * 119.99239 * 179.97438 * 13 12 10 30 30 H 1.08994 * 109.46849 * 89.99572 * 19 18 4 31 31 H 1.08994 * 109.46966 * 209.99933 * 19 18 4 32 32 H 1.08999 * 109.46502 * 329.99791 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0617 0.0013 7 7 4.5879 2.8825 0.0020 8 6 5.7632 3.7569 0.0088 9 6 5.3114 5.2187 0.0152 10 6 6.5204 6.1182 0.0216 11 1 7.5120 5.6901 0.0216 12 6 6.3607 7.4877 0.0274 13 7 7.4159 8.2727 0.0335 14 14 4.6457 8.2281 0.0281 15 1 4.1891 8.4180 1.4284 16 1 4.6729 9.5406 -0.6661 17 1 3.7117 7.3142 -0.6774 18 6 3.5660 -0.6971 -0.0051 19 6 4.7802 -1.5898 -0.0123 20 8 2.2832 -1.0931 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 3.6973 3.2670 0.0024 25 1 6.3596 3.5572 0.8992 26 1 6.3634 3.5660 -0.8808 27 1 4.7150 5.4184 -0.8751 28 1 4.7113 5.4097 0.9049 29 1 7.3035 9.2362 0.0372 30 1 5.0758 -1.8092 1.0136 31 1 4.5442 -2.5198 -0.5293 32 1 5.5986 -1.0857 -0.5264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292912206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:24 Heat of formation + Delta-G solvation = -57.251216 kcal Electronic energy + Delta-G solvation = -16230.743221 eV Core-core repulsion = 13384.517748 eV Total energy + Delta-G solvation = -2846.225473 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.51699 -40.59953 -36.76096 -36.01344 -34.79850 -34.05841 -32.12289 -30.92422 -27.95344 -26.38529 -24.27349 -22.85235 -22.29396 -21.39746 -19.14183 -18.86436 -18.14682 -16.87667 -16.78761 -16.49807 -16.22548 -15.30642 -15.15234 -14.99080 -14.67631 -14.38642 -14.28459 -13.57044 -13.50764 -13.39006 -13.17951 -13.09063 -12.38695 -12.24777 -12.18420 -11.89755 -11.78884 -11.54700 -11.17865 -10.80183 -10.22074 -9.77561 -8.31552 -6.38536 -0.01882 0.92579 1.37913 1.39776 1.42512 1.51508 2.09897 2.16537 2.35447 2.88948 3.03347 3.55169 3.70301 4.13640 4.27849 4.32740 4.38294 4.55683 4.66706 4.67195 4.71107 4.77615 4.88713 5.01649 5.15026 5.24041 5.34807 5.36304 5.59744 6.19620 6.29471 6.57773 6.68908 7.05794 7.26127 8.84999 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.005044 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.895473 B = 5549.578518 C = 6333.416195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.199 3.801 3 N -0.489 5.489 4 C -0.105 4.105 5 C 0.593 3.407 6 O -0.566 6.566 7 N -0.703 5.703 8 C 0.145 3.855 9 C -0.013 4.013 10 C -0.538 4.538 11 H 0.034 0.966 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.955 3.045 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.243 1.243 18 C 0.045 3.955 19 C -0.074 4.074 20 O -0.195 6.195 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.413 0.587 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.269 0.731 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.647 -20.221 -0.111 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.010 4.010 3 N -0.219 5.219 4 C -0.223 4.223 5 C 0.379 3.621 6 O -0.447 6.447 7 N -0.353 5.353 8 C 0.022 3.978 9 C -0.051 4.051 10 C -0.576 4.576 11 H 0.052 0.948 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.166 1.166 18 C -0.012 4.012 19 C -0.130 4.130 20 O -0.083 6.083 21 H 0.132 0.868 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.249 0.751 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.015 -19.738 -0.113 26.060 hybrid contribution -0.035 0.452 0.029 0.454 sum -17.050 -19.286 -0.084 25.742 Atomic orbital electron populations 1.20638 0.77093 1.06913 1.06568 1.27318 0.98071 0.77383 0.98223 1.70718 1.00570 1.31418 1.19243 1.21365 0.92062 0.93003 1.15890 1.17059 0.86646 0.82135 0.76215 1.90739 1.25488 1.75670 1.52764 1.45938 1.11245 1.05299 1.72831 1.21162 0.86571 0.89445 1.00667 1.19653 0.96491 0.91117 0.97861 1.21208 0.93048 0.91735 1.51640 0.94775 1.26004 1.01781 0.97480 0.93644 1.70066 1.32118 1.04715 1.51862 0.85595 0.79342 0.77954 0.79372 1.18961 1.20867 1.16621 1.24127 0.84879 0.94121 0.98093 1.20680 0.88595 0.98068 1.05615 1.84352 1.15917 1.38072 1.69982 0.86830 0.86701 0.87074 0.75121 0.92916 0.92910 0.94840 0.94969 0.92243 0.87783 0.87225 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.24 0.75 0.27 16 2 C 0.20 4.09 8.30 88.39 0.73 4.82 16 3 N -0.49 -13.64 11.06 -293.02 -3.24 -16.88 16 4 C -0.10 -3.25 6.99 40.41 0.28 -2.96 16 5 C 0.59 21.83 7.81 86.66 0.68 22.51 16 6 O -0.57 -23.07 14.81 -4.07 -0.06 -23.13 16 7 N -0.70 -26.17 5.55 -466.35 -2.59 -28.76 16 8 C 0.14 6.26 5.61 86.38 0.48 6.74 16 9 C -0.01 -0.63 4.16 29.85 0.12 -0.51 16 10 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 11 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 12 C 0.01 0.49 5.47 84.65 0.46 0.95 16 13 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 14 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 18 C 0.04 1.13 7.44 25.19 0.19 1.32 16 19 C -0.07 -1.41 9.87 71.24 0.70 -0.70 16 20 O -0.20 -4.22 10.73 0.33 0.00 -4.22 16 21 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.41 13.95 8.20 -92.71 -0.76 13.19 16 25 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 28 H 0.03 1.43 7.57 -2.38 -0.02 1.41 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 2.25 6.49 -2.39 -0.02 2.24 16 Total: -1.00 -74.01 282.90 1.27 -72.74 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.32 Total: 12.72 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.65 Total: 1.34 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.53 Total: -104.91 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -74.01 1.27 -72.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292912206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.489 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds