Wall clock time and date at job start Sun Mar 29 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33676 * 126.27877 * 2 1 4 4 C 1.30622 * 109.00894 * 180.27502 * 3 2 1 5 5 C 1.50701 * 125.41601 * 179.69290 * 4 3 2 6 6 C 1.53002 * 109.47087 * 120.01478 * 5 4 3 7 7 C 1.52996 * 109.47315 * 240.01371 * 5 4 3 8 8 O 1.33696 * 109.17090 * 359.72770 * 4 3 2 9 9 C 1.35346 * 107.68498 * 0.02562 * 8 4 3 10 10 C 1.46586 * 126.65811 * 180.02562 * 9 8 4 11 11 O 1.21727 * 120.00192 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99566 * 0.02562 * 10 9 8 13 13 C 1.36865 * 120.00037 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99381 * 359.97438 * 13 12 10 15 15 C 1.39021 * 119.99823 * 179.73050 * 13 12 10 16 16 N 1.31384 * 120.00392 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99559 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47347 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47197 * 119.99997 * 17 15 13 20 20 H 1.48501 * 109.47363 * 239.99357 * 17 15 13 21 21 H 1.08993 * 109.47274 * 270.18410 * 1 2 3 22 22 H 1.09002 * 109.47621 * 30.18889 * 1 2 3 23 23 H 1.09000 * 109.47018 * 150.18618 * 1 2 3 24 24 H 1.08998 * 109.46809 * 0.02562 * 5 4 3 25 25 H 1.08993 * 109.47021 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47131 * 300.00107 * 6 5 4 27 27 H 1.08998 * 109.47132 * 60.00398 * 6 5 4 28 28 H 1.09003 * 109.46804 * 60.00599 * 7 5 4 29 29 H 1.09001 * 109.46994 * 179.97438 * 7 5 4 30 30 H 1.08993 * 109.47216 * 300.00315 * 7 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 32 32 H 0.97000 * 119.99611 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0776 0.0000 4 6 3.5453 0.6899 -0.0059 5 6 4.7438 1.6034 -0.0146 6 6 5.5936 1.3415 1.2305 7 6 5.5796 1.3364 -1.2679 8 8 3.5896 -0.6464 -0.0039 9 6 2.3145 -1.1001 0.0030 10 6 1.8842 -2.5014 0.0080 11 8 0.6978 -2.7737 0.0137 12 7 2.8022 -3.4881 0.0063 13 6 2.4006 -4.7965 0.0104 14 1 1.3479 -5.0381 0.0154 15 6 3.3475 -5.8143 0.0030 16 7 4.6280 -5.5203 -0.0085 17 14 2.7992 -7.6000 0.0093 18 1 1.3156 -7.6623 0.0217 19 1 3.3125 -8.2798 -1.2072 20 1 3.3338 -8.2778 1.2177 21 1 -0.3633 0.0033 1.0276 22 1 -0.3634 0.8883 -0.5168 23 1 -0.3633 -0.8917 -0.5109 24 1 4.4097 2.6409 -0.0146 25 1 6.4602 2.0025 1.2245 26 1 4.9982 1.5317 2.1235 27 1 5.9277 0.3040 1.2307 28 1 4.9742 1.5230 -2.1549 29 1 6.4462 1.9974 -1.2743 30 1 5.9136 0.2989 -1.2677 31 1 3.7477 -3.2711 0.0022 32 1 5.2886 -6.2306 -0.0140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293357648.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:32 Heat of formation + Delta-G solvation = -37.173924 kcal Electronic energy + Delta-G solvation = -16808.557615 eV Core-core repulsion = 13963.202758 eV Total energy + Delta-G solvation = -2845.354856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.84425 -38.10741 -35.54571 -34.91703 -34.04713 -31.46622 -30.52236 -27.40079 -27.25826 -25.18855 -23.58312 -21.19873 -20.45516 -19.46720 -18.24115 -16.87361 -16.33727 -15.59735 -14.89440 -14.84723 -14.11368 -13.87216 -13.53659 -13.05883 -13.03123 -12.75760 -12.56347 -12.24392 -11.88845 -11.74923 -11.42300 -11.34844 -11.24585 -11.07737 -10.50216 -10.49099 -10.43363 -10.28342 -9.77156 -8.78631 -8.29745 -8.11534 -6.68127 -4.01721 1.50719 2.89933 3.02533 3.10372 3.16137 3.23516 3.98155 4.08374 4.15739 4.74356 4.94502 4.98481 5.11327 5.13456 5.39072 5.54011 5.60347 5.74495 5.74774 5.85968 6.10472 6.12300 6.14587 6.22544 6.27938 6.38299 6.50569 6.86439 7.31172 7.77279 8.12042 8.35669 8.89883 9.25381 9.76950 10.47720 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.006858 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.161579 B = 4081.703337 C = 4935.797256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.027 3.973 3 N -0.485 5.485 4 C 0.183 3.817 5 C 0.007 3.993 6 C -0.150 4.150 7 C -0.150 4.150 8 O -0.189 6.189 9 C -0.061 4.061 10 C 0.502 3.498 11 O -0.574 6.574 12 N -0.527 5.527 13 C -0.298 4.298 14 H 0.113 0.887 15 C 0.026 3.974 16 N -0.880 5.880 17 Si 0.938 3.062 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.398 0.602 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 10.491 -0.087 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.097 4.097 3 N -0.215 5.215 4 C -0.023 4.023 5 C -0.012 4.012 6 C -0.208 4.208 7 C -0.208 4.208 8 O -0.075 6.075 9 C -0.117 4.117 10 C 0.288 3.712 11 O -0.461 6.461 12 N -0.160 5.160 13 C -0.427 4.427 14 H 0.131 0.869 15 C -0.179 4.179 16 N -0.519 5.519 17 Si 0.764 3.236 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.203 1.203 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.126 0.874 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.574 10.730 -0.083 11.035 hybrid contribution 0.708 -1.388 0.024 1.558 sum 3.282 9.343 -0.058 9.903 Atomic orbital electron populations 1.20188 0.85964 1.03448 1.02788 1.21775 0.97957 0.86478 1.03516 1.70133 1.00424 1.31685 1.19252 1.26108 0.95028 0.79899 1.01255 1.19646 0.88156 0.95992 0.97445 1.21900 0.99473 1.03150 0.96314 1.21897 0.99572 1.03141 0.96219 1.84452 1.30497 1.23110 1.69408 1.23772 0.80206 0.97432 1.10242 1.15940 0.86410 0.80562 0.88247 1.90670 1.15591 1.80685 1.59191 1.41919 1.08670 1.05726 1.59659 1.19951 0.95403 0.80301 1.47068 0.86931 1.25481 0.94734 1.01383 0.96263 1.69631 1.00359 1.34892 1.47010 0.85664 0.79409 0.80519 0.78018 1.18762 1.20357 1.20348 0.91143 0.91750 0.88703 0.87369 0.91140 0.92065 0.91491 0.92059 0.91136 0.91489 0.76755 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 9.87 36.00 0.36 -0.84 16 2 C 0.03 0.56 7.16 -82.43 -0.59 -0.03 16 3 N -0.49 -9.31 11.26 -7.04 -0.08 -9.39 16 4 C 0.18 3.22 6.82 -12.79 -0.09 3.13 16 5 C 0.01 0.09 3.39 -91.77 -0.31 -0.22 16 6 C -0.15 -1.65 9.18 37.16 0.34 -1.30 16 7 C -0.15 -1.64 9.18 37.16 0.34 -1.30 16 8 O -0.19 -3.85 10.57 4.34 0.05 -3.81 16 9 C -0.06 -1.36 7.18 -36.86 -0.26 -1.63 16 10 C 0.50 12.80 7.73 -12.89 -0.10 12.70 16 11 O -0.57 -15.63 14.37 5.16 0.07 -15.56 16 12 N -0.53 -13.87 5.27 -12.20 -0.06 -13.93 16 13 C -0.30 -8.14 9.68 -15.01 -0.15 -8.28 16 14 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 15 C 0.03 0.68 5.50 -17.45 -0.10 0.58 16 16 N -0.88 -23.26 13.05 55.50 0.72 -22.53 16 17 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 18 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.09 1.84 6.48 -51.93 -0.34 1.51 16 24 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.40 10.27 7.69 -40.82 -0.31 9.96 16 32 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -30.20 283.98 -4.57 -34.76 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.96 Total: 8.33 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.56 Total: 2.80 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.58 Total: -45.86 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.12 Total: -19.37 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.20 -4.57 -34.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293357648.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.412 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds