Wall clock time and date at job start Sun Mar 29 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33676 * 126.27877 * 2 1 4 4 C 1.30622 * 109.00894 * 180.27502 * 3 2 1 5 5 C 1.50701 * 125.41601 * 179.69290 * 4 3 2 6 6 C 1.53002 * 109.47087 * 120.01478 * 5 4 3 7 7 C 1.52996 * 109.47315 * 240.01371 * 5 4 3 8 8 O 1.33696 * 109.17090 * 359.72770 * 4 3 2 9 9 C 1.35346 * 107.68498 * 0.02562 * 8 4 3 10 10 C 1.46586 * 126.65811 * 180.02562 * 9 8 4 11 11 O 1.21727 * 120.00192 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99566 * 0.02562 * 10 9 8 13 13 C 1.36865 * 120.00037 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99381 * 359.97438 * 13 12 10 15 15 C 1.39021 * 119.99823 * 179.73050 * 13 12 10 16 16 N 1.31384 * 120.00392 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99559 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47347 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47197 * 119.99997 * 17 15 13 20 20 H 1.48501 * 109.47363 * 239.99357 * 17 15 13 21 21 H 1.08993 * 109.47274 * 270.18410 * 1 2 3 22 22 H 1.09002 * 109.47621 * 30.18889 * 1 2 3 23 23 H 1.09000 * 109.47018 * 150.18618 * 1 2 3 24 24 H 1.08998 * 109.46809 * 0.02562 * 5 4 3 25 25 H 1.08993 * 109.47021 * 180.02562 * 6 5 4 26 26 H 1.09004 * 109.47131 * 300.00107 * 6 5 4 27 27 H 1.08998 * 109.47132 * 60.00398 * 6 5 4 28 28 H 1.09003 * 109.46804 * 60.00599 * 7 5 4 29 29 H 1.09001 * 109.46994 * 179.97438 * 7 5 4 30 30 H 1.08993 * 109.47216 * 300.00315 * 7 5 4 31 31 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 32 32 H 0.97000 * 119.99611 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0776 0.0000 4 6 3.5453 0.6899 -0.0059 5 6 4.7438 1.6034 -0.0146 6 6 5.5936 1.3415 1.2305 7 6 5.5796 1.3364 -1.2679 8 8 3.5896 -0.6464 -0.0039 9 6 2.3145 -1.1001 0.0030 10 6 1.8842 -2.5014 0.0080 11 8 0.6978 -2.7737 0.0137 12 7 2.8022 -3.4881 0.0063 13 6 2.4006 -4.7965 0.0104 14 1 1.3479 -5.0381 0.0154 15 6 3.3475 -5.8143 0.0030 16 7 4.6280 -5.5203 -0.0085 17 14 2.7992 -7.6000 0.0093 18 1 1.3156 -7.6623 0.0217 19 1 3.3125 -8.2798 -1.2072 20 1 3.3338 -8.2778 1.2177 21 1 -0.3633 0.0033 1.0276 22 1 -0.3634 0.8883 -0.5168 23 1 -0.3633 -0.8917 -0.5109 24 1 4.4097 2.6409 -0.0146 25 1 6.4602 2.0025 1.2245 26 1 4.9982 1.5317 2.1235 27 1 5.9277 0.3040 1.2307 28 1 4.9742 1.5230 -2.1549 29 1 6.4462 1.9974 -1.2743 30 1 5.9136 0.2989 -1.2677 31 1 3.7477 -3.2711 0.0022 32 1 5.2886 -6.2306 -0.0140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293357648.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:32 Heat of formation + Delta-G solvation = -59.537484 kcal Electronic energy + Delta-G solvation = -16809.527372 eV Core-core repulsion = 13963.202758 eV Total energy + Delta-G solvation = -2846.324613 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.43303 -40.09824 -36.65032 -36.60327 -35.92202 -33.47954 -32.04089 -29.08555 -28.12822 -27.02143 -25.04678 -22.80704 -22.00214 -21.00425 -20.24453 -18.70098 -17.93840 -17.09252 -16.64126 -16.25088 -15.78483 -15.40153 -15.19970 -14.87658 -14.25110 -14.10460 -14.08181 -13.63114 -13.24576 -13.08594 -13.00197 -12.57281 -12.53108 -12.31567 -12.11646 -12.04617 -11.95005 -11.89045 -11.69433 -10.78278 -10.27260 -9.79920 -8.64452 -6.10569 -0.13997 1.30677 1.39723 1.45201 1.49231 1.57468 2.17336 2.21954 2.74766 3.03537 3.11608 3.73602 3.84504 4.02584 4.03438 4.25284 4.52147 4.55833 4.71035 4.74136 4.81420 4.87150 4.88252 4.96139 5.07086 5.26607 5.28101 5.31274 5.37635 5.76046 6.30342 6.56784 6.87824 7.24643 7.76123 8.52559 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.006858 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.161579 B = 4081.703337 C = 4935.797256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.043 3.957 3 N -0.499 5.499 4 C 0.208 3.792 5 C 0.004 3.996 6 C -0.148 4.148 7 C -0.148 4.148 8 O -0.198 6.198 9 C -0.108 4.108 10 C 0.505 3.495 11 O -0.599 6.599 12 N -0.538 5.538 13 C -0.338 4.338 14 H 0.096 0.904 15 C -0.008 4.008 16 N -0.906 5.906 17 Si 1.007 2.993 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.267 1.267 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.397 0.603 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 11.907 -0.061 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 N -0.228 5.228 4 C 0.002 3.998 5 C -0.015 4.015 6 C -0.205 4.205 7 C -0.205 4.205 8 O -0.085 6.085 9 C -0.163 4.163 10 C 0.293 3.707 11 O -0.489 6.489 12 N -0.171 5.171 13 C -0.467 4.467 14 H 0.113 0.887 15 C -0.210 4.210 16 N -0.545 5.545 17 Si 0.829 3.171 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.191 1.191 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.095 0.905 24 H 0.152 0.848 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.231 0.769 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.546 12.163 -0.057 12.670 hybrid contribution 0.468 -1.565 0.015 1.634 sum 4.015 10.598 -0.042 11.333 Atomic orbital electron populations 1.20260 0.84349 1.03951 1.03753 1.22278 0.99178 0.86300 1.00318 1.70252 1.00856 1.30790 1.20947 1.27548 0.96399 0.79305 0.96562 1.20147 0.86582 0.95810 0.98997 1.21918 1.00414 1.03065 0.95143 1.21916 1.00528 1.03055 0.95034 1.84442 1.29672 1.24590 1.69846 1.23186 0.81514 0.96490 1.15076 1.16286 0.86059 0.81696 0.86703 1.90625 1.16502 1.81876 1.59852 1.41919 1.08589 1.05802 1.60777 1.19979 0.95127 0.81401 1.50190 0.88651 1.26366 0.94577 1.05208 0.94892 1.69691 1.01187 1.36482 1.47098 0.84675 0.78747 0.75075 0.78651 1.19023 1.19168 1.19147 0.89837 0.88811 0.90500 0.84792 0.87383 0.92516 0.93188 0.92508 0.87377 0.93189 0.76929 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.32 9.87 71.23 0.70 -1.62 16 2 C 0.04 1.77 7.16 41.86 0.30 2.07 16 3 N -0.50 -18.38 11.26 -290.94 -3.27 -21.65 16 4 C 0.21 7.02 6.82 88.29 0.60 7.62 16 5 C 0.00 0.08 3.39 -11.54 -0.04 0.04 16 6 C -0.15 -2.81 9.18 71.98 0.66 -2.15 16 7 C -0.15 -2.80 9.18 71.98 0.66 -2.14 16 8 O -0.20 -8.16 10.57 -7.40 -0.08 -8.24 16 9 C -0.11 -4.94 7.18 24.04 0.17 -4.77 16 10 C 0.50 26.83 7.73 86.42 0.67 27.50 16 11 O -0.60 -34.00 14.37 -4.43 -0.06 -34.06 16 12 N -0.54 -29.61 5.27 -310.71 -1.64 -31.25 16 13 C -0.34 -19.22 9.68 84.10 0.81 -18.41 16 14 H 0.10 5.62 7.15 -2.91 -0.02 5.60 16 15 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 16 N -0.91 -48.48 13.05 21.68 0.28 -48.19 16 17 Si 1.01 41.37 29.55 68.60 2.03 43.40 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 23 H 0.08 3.02 6.48 -2.39 -0.02 3.00 16 24 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.40 21.44 7.69 -92.70 -0.71 20.73 16 32 H 0.29 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.90 283.98 2.69 -64.21 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.43 Total: 27.60 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.01 Total: 8.18 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.63 Total: -101.09 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.14 Total: -42.30 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -66.90 2.69 -64.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293357648.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -66.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds