Wall clock time and date at job start Sun Mar 29 2020 22:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 C 1.50701 * 109.47281 * 180.02562 * 3 2 1 5 5 N 1.30622 * 125.41665 * 89.97811 * 4 3 2 6 6 C 1.33676 * 109.00894 * 179.76754 * 5 4 3 7 7 C 1.50695 * 126.27877 * 180.27502 * 6 5 4 8 8 C 1.36468 * 107.43945 * 0.43064 * 6 5 4 9 9 C 1.46586 * 126.64748 * 179.83692 * 8 6 5 10 10 O 1.21727 * 120.00192 * 359.72019 * 9 8 6 11 11 N 1.34777 * 119.99566 * 179.71203 * 9 8 6 12 12 C 1.36865 * 120.00037 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99381 * 359.97438 * 12 11 9 14 14 C 1.39021 * 119.99823 * 179.73050 * 12 11 9 15 15 N 1.31384 * 120.00392 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99559 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47347 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47197 * 119.99997 * 16 14 12 19 19 H 1.48501 * 109.47363 * 239.99357 * 16 14 12 20 20 O 1.33696 * 125.41244 * 270.02429 * 4 3 2 21 21 H 1.09001 * 109.47191 * 60.00546 * 1 2 3 22 22 H 1.09004 * 109.47381 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47057 * 300.00133 * 1 2 3 24 24 H 1.09006 * 109.46970 * 239.99381 * 2 1 3 25 25 H 1.09005 * 109.47101 * 119.99933 * 2 1 3 26 26 H 1.09001 * 109.47240 * 59.99979 * 3 2 1 27 27 H 1.09005 * 109.47055 * 299.99962 * 3 2 1 28 28 H 1.08993 * 109.47274 * 270.18410 * 7 6 5 29 29 H 1.09002 * 109.47621 * 30.18889 * 7 6 5 30 30 H 1.09000 * 109.47018 * 150.18618 * 7 6 5 31 31 H 0.97005 * 120.00189 * 0.02562 * 11 9 8 32 32 H 0.97000 * 119.99611 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3035 1.4422 -1.0655 6 6 5.5860 1.4475 -0.6884 7 6 6.7841 1.4549 -1.6024 8 6 5.6112 1.4413 0.6760 9 6 6.8032 1.4405 1.5291 10 8 7.9117 1.4405 1.0261 11 7 6.6718 1.4399 2.8705 12 6 7.7847 1.4396 3.6671 13 1 8.7682 1.4395 3.2207 14 6 7.6492 1.4447 5.0507 15 7 6.4527 1.4501 5.5936 16 14 9.1682 1.4436 6.1379 17 1 10.3856 1.4377 5.2875 18 1 9.1670 2.6591 6.9912 19 1 9.1595 0.2341 6.9994 20 8 4.3222 1.4418 1.0887 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5140 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 7.0758 0.4291 -1.8275 29 1 6.5319 1.9724 -2.5280 30 1 7.6114 1.9687 -1.1128 31 1 5.7885 1.4396 3.2713 32 1 6.3583 1.4540 6.5589 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293448229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:26 Heat of formation + Delta-G solvation = -62.082602 kcal Electronic energy + Delta-G solvation = -16535.762812 eV Core-core repulsion = 13689.327835 eV Total energy + Delta-G solvation = -2846.434978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.41461 -40.08986 -36.64469 -36.30989 -35.85896 -33.48797 -32.44423 -29.43196 -28.59720 -26.65944 -23.66150 -22.83299 -22.12702 -21.41717 -20.24156 -18.71207 -17.92940 -17.05287 -16.74371 -16.14345 -15.84007 -15.40301 -15.37657 -14.97668 -14.28532 -14.17570 -14.00631 -13.62923 -13.23496 -13.05631 -12.99793 -12.64960 -12.55449 -12.28462 -12.11279 -11.91695 -11.89434 -11.69259 -11.62953 -10.78060 -10.27149 -9.78813 -8.64422 -6.10553 -0.14405 1.30488 1.40022 1.45194 1.49845 1.57848 2.17542 2.22260 2.80167 3.05320 3.11804 3.74967 3.92175 4.00826 4.07067 4.31788 4.49792 4.58793 4.67583 4.70505 4.73146 4.90325 4.92187 5.00176 5.20042 5.25072 5.27321 5.40167 5.44306 5.76163 6.30480 6.56862 6.87986 7.24862 7.76276 8.52734 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.006181 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.630299 B = 4528.927573 C = 5464.130580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.021 4.021 4 C 0.204 3.796 5 N -0.497 5.497 6 C 0.044 3.956 7 C -0.066 4.066 8 C -0.107 4.107 9 C 0.505 3.495 10 O -0.599 6.599 11 N -0.539 5.539 12 C -0.338 4.338 13 H 0.096 0.904 14 C -0.008 4.008 15 N -0.907 5.907 16 Si 1.007 2.993 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.267 1.267 20 O -0.202 6.202 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.397 0.603 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -0.869 -7.505 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.059 4.059 4 C -0.001 4.001 5 N -0.226 5.226 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.162 4.162 9 C 0.292 3.708 10 O -0.488 6.488 11 N -0.172 5.172 12 C -0.467 4.467 13 H 0.114 0.886 14 C -0.210 4.210 15 N -0.546 5.546 16 Si 0.829 3.171 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.192 1.192 20 O -0.090 6.090 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.130 0.870 27 H 0.147 0.853 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.231 0.769 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.475 -0.866 -8.141 13.295 hybrid contribution 0.525 -0.030 1.560 1.646 sum -9.950 -0.896 -6.581 11.963 Atomic orbital electron populations 1.21716 0.92382 1.02889 1.03139 1.21527 0.98212 0.93757 1.02334 1.20568 0.77508 1.00663 1.07167 1.27518 0.97847 0.96765 0.78013 1.70239 1.01169 1.20826 1.30410 1.22276 0.94299 1.00239 0.91153 1.20261 0.91233 1.03741 0.97097 1.23171 0.82130 1.15094 0.95844 1.16295 0.85743 0.86685 0.82036 1.90626 1.24589 1.59829 1.73788 1.41926 1.10104 1.60803 1.04318 1.19983 0.87955 1.50158 0.88579 0.88629 1.26365 1.01822 0.94872 0.97951 1.69692 1.24021 1.47178 1.13702 0.84672 0.76571 0.78640 0.77247 1.18989 1.19176 1.19168 1.84468 1.16300 1.69953 1.38266 0.91046 0.91726 0.91615 0.91773 0.92693 0.86981 0.85345 0.89865 0.88786 0.90503 0.76916 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -2.28 5.92 30.59 0.18 -2.09 16 3 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 4 C 0.20 6.78 7.57 88.29 0.67 7.44 16 5 N -0.50 -18.01 11.26 -290.94 -3.27 -21.28 16 6 C 0.04 1.80 7.16 41.86 0.30 2.10 16 7 C -0.07 -2.31 9.87 71.23 0.70 -1.61 16 8 C -0.11 -4.90 7.18 24.04 0.17 -4.73 16 9 C 0.50 26.74 7.73 86.42 0.67 27.40 16 10 O -0.60 -33.88 14.37 -4.43 -0.06 -33.94 16 11 N -0.54 -29.60 5.27 -310.71 -1.64 -31.23 16 12 C -0.34 -19.18 9.68 84.10 0.81 -18.37 16 13 H 0.10 5.62 7.15 -2.91 -0.02 5.60 16 14 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 15 N -0.91 -48.61 13.05 21.68 0.28 -48.33 16 16 Si 1.01 41.33 29.55 68.60 2.03 43.36 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 O -0.20 -8.27 10.57 -7.40 -0.08 -8.35 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 24 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 3.00 6.48 -2.39 -0.02 2.98 16 31 H 0.40 21.40 7.69 -92.70 -0.71 20.69 16 32 H 0.29 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -66.54 284.66 2.54 -64.00 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.43 Total: 27.01 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.86 Total: 8.77 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -4.63 Total: -100.85 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.14 Total: -42.29 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -66.54 2.54 -64.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293448229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds