Wall clock time and date at job start Sun Mar 29 2020 21:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47209 * 189.02103 * 3 2 1 5 5 C 1.37092 * 119.99942 * 263.95399 * 4 3 2 6 6 H 1.08003 * 120.00367 * 200.21921 * 5 4 3 7 7 C 1.38951 * 120.00240 * 20.21144 * 5 4 3 8 8 N 1.31411 * 119.99949 * 21.42981 * 7 5 4 9 9 Si 1.86796 * 120.00427 * 201.42529 * 7 5 4 10 10 H 1.48495 * 109.47004 * 60.00067 * 9 7 5 11 11 H 1.48502 * 109.47614 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47016 * 300.00235 * 9 7 5 13 13 C 1.34773 * 119.99882 * 83.94720 * 4 3 2 14 14 O 1.21292 * 119.99837 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00267 * 0.02562 * 13 4 3 16 16 C 1.52997 * 109.47320 * 179.97438 * 15 13 4 17 17 H 1.09001 * 109.82470 * 305.56578 * 16 15 13 18 18 C 1.54382 * 109.83210 * 184.58408 * 16 15 13 19 19 C 1.55297 * 102.25634 * 219.13115 * 18 16 15 20 20 C 1.54946 * 100.94178 * 34.13478 * 19 18 16 21 21 O 1.43241 * 109.82834 * 66.45516 * 16 15 13 22 22 H 1.09004 * 109.47089 * 69.01792 * 3 2 1 23 23 H 1.08999 * 109.47123 * 309.02360 * 3 2 1 24 24 H 0.97001 * 120.00416 * 180.02562 * 8 7 5 25 25 H 1.08995 * 109.46972 * 299.99992 * 15 13 4 26 26 H 1.09007 * 109.47342 * 59.99286 * 15 13 4 27 27 H 1.08999 * 110.84923 * 337.32634 * 18 16 15 28 28 H 1.09000 * 110.84413 * 100.93782 * 18 16 15 29 29 H 1.08999 * 111.13119 * 276.21876 * 19 18 16 30 30 H 1.09004 * 111.12822 * 152.05072 * 19 18 16 31 31 H 1.09006 * 110.31322 * 204.64257 * 20 19 18 32 32 H 1.09002 * 110.30841 * 82.46656 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3650 0.2166 5 6 3.4418 2.1474 -0.8547 6 1 4.0907 2.9992 -0.7141 7 6 2.9578 1.8444 -2.1214 8 7 1.8755 1.1109 -2.2532 9 14 3.8454 2.4799 -3.6372 10 1 5.2362 1.9598 -3.6508 11 1 3.1330 2.0214 -4.8568 12 1 3.8724 3.9645 -3.6090 13 6 3.2041 1.8510 1.4689 14 8 3.6084 2.9805 1.6483 15 6 2.8242 0.9909 2.6466 16 6 3.0401 1.7756 3.9421 17 1 4.0637 2.1480 3.9825 18 6 2.7635 0.8655 5.1580 19 6 2.0376 1.8309 6.1341 20 6 1.2517 2.7202 5.1379 21 8 2.1211 2.8726 4.0046 22 1 2.9715 -0.3672 -0.9596 23 1 2.9716 -0.6462 0.7984 24 1 1.5377 0.8990 -3.1375 25 1 1.7754 0.7056 2.5647 26 1 3.4446 0.0947 2.6572 27 1 2.1152 0.0342 4.8809 28 1 3.6957 0.5038 5.5918 29 1 2.7526 2.4208 6.7076 30 1 1.3609 1.2874 6.7936 31 1 1.0386 3.6915 5.5845 32 1 0.3256 2.2282 4.8408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299517095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:03 Heat of formation + Delta-G solvation = -68.457623 kcal Electronic energy + Delta-G solvation = -17167.221334 eV Core-core repulsion = 14320.509914 eV Total energy + Delta-G solvation = -2846.711419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94227 -39.78394 -37.51321 -36.12043 -33.86778 -33.12937 -32.33214 -29.17223 -28.03298 -26.09290 -22.88220 -22.20119 -20.57806 -19.70066 -18.28698 -17.86726 -17.68331 -16.71050 -16.46385 -16.00254 -15.55910 -15.18088 -14.68209 -14.54486 -14.19434 -13.91996 -13.62776 -13.40667 -13.16654 -12.91507 -12.69878 -12.52531 -12.32888 -12.21825 -12.09197 -11.98265 -11.93063 -11.62077 -11.07769 -10.40661 -10.31586 -9.86150 -8.37936 -5.94804 1.42230 1.47525 1.57097 1.86272 2.12906 2.27500 2.37581 2.99298 3.02769 3.23257 3.62916 3.64998 3.87086 4.02823 4.09491 4.27517 4.38942 4.50362 4.63458 4.69994 4.85131 4.88590 4.90194 4.95379 5.04808 5.13412 5.37404 5.50092 6.08257 6.32311 6.45488 7.03228 7.17393 7.40473 8.00908 8.66080 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035211 B = 0.007111 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.023645 B = 3936.430176 C = 4351.130533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.257 3.743 3 C 0.223 3.777 4 N -0.463 5.463 5 C -0.342 4.342 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.286 1.286 13 C 0.452 3.548 14 O -0.609 6.609 15 C -0.140 4.140 16 C 0.092 3.908 17 H 0.069 0.931 18 C -0.141 4.141 19 C -0.144 4.144 20 C 0.030 3.970 21 O -0.407 6.407 22 H 0.121 0.879 23 H 0.143 0.857 24 H 0.273 0.727 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -7.247 12.232 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.060 4.060 3 C 0.097 3.903 4 N -0.184 5.184 5 C -0.469 4.469 6 H 0.096 0.904 7 C -0.199 4.199 8 N -0.534 5.534 9 Si 0.811 3.189 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.212 1.212 13 C 0.242 3.758 14 O -0.494 6.494 15 C -0.180 4.180 16 C 0.034 3.966 17 H 0.087 0.913 18 C -0.178 4.178 19 C -0.181 4.181 20 C -0.046 4.046 21 O -0.327 6.327 22 H 0.138 0.862 23 H 0.160 0.840 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.098 -6.598 12.004 13.857 hybrid contribution 0.323 0.671 -1.226 1.435 sum 2.420 -5.926 10.778 12.536 Atomic orbital electron populations 1.80878 1.14874 1.10037 1.13379 1.29855 0.95944 0.91041 0.89188 1.19055 0.79980 0.85217 1.06086 1.43857 1.57421 1.12014 1.05104 1.19545 1.28653 1.12611 0.86130 0.90444 1.25908 0.95053 0.97600 1.01305 1.69926 1.18685 1.39615 1.25193 0.85095 0.79046 0.77938 0.76835 1.18200 1.20434 1.21156 1.21139 0.81747 0.87912 0.84953 1.90527 1.51173 1.21992 1.85665 1.22141 1.03462 0.99810 0.92555 1.22590 0.93436 0.86641 0.93953 0.91350 1.23218 1.03196 0.98097 0.93325 1.23238 0.99811 0.97450 0.97650 1.23632 0.93572 1.01009 0.86402 1.88635 1.48748 1.46398 1.48875 0.86164 0.83957 0.91714 0.90033 0.84449 0.88976 0.87334 0.89800 0.87475 0.89651 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.52 18.54 20.01 0.37 -24.15 16 2 C 0.26 11.29 12.82 89.44 1.15 12.44 16 3 C 0.22 8.51 4.91 84.57 0.42 8.92 16 4 N -0.46 -22.04 2.60 -645.41 -1.68 -23.72 16 5 C -0.34 -18.42 9.27 84.04 0.78 -17.64 16 6 H 0.08 4.52 7.43 -2.91 -0.02 4.50 16 7 C 0.00 0.16 4.84 84.93 0.41 0.57 16 8 N -0.90 -46.23 9.58 21.66 0.21 -46.02 16 9 Si 0.99 41.20 29.60 68.60 2.03 43.23 16 10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.45 21.18 7.46 87.66 0.65 21.83 16 14 O -0.61 -34.39 15.16 8.79 0.13 -34.26 16 15 C -0.14 -4.61 3.88 29.85 0.12 -4.50 16 16 C 0.09 2.89 3.04 31.06 0.09 2.98 16 17 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 18 C -0.14 -2.74 6.54 31.85 0.21 -2.53 16 19 C -0.14 -2.66 7.16 32.05 0.23 -2.43 16 20 C 0.03 0.81 7.78 72.65 0.56 1.38 16 21 O -0.41 -15.77 10.36 -137.12 -1.42 -17.19 16 22 H 0.12 4.69 6.63 -2.39 -0.02 4.67 16 23 H 0.14 3.65 6.69 -2.39 -0.02 3.63 16 24 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 25 H 0.08 2.74 7.49 -2.39 -0.02 2.72 16 26 H 0.14 3.15 7.42 -2.38 -0.02 3.13 16 27 H 0.09 1.55 7.85 -2.39 -0.02 1.53 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -75.01 275.34 5.39 -69.62 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.13 Total: 11.45 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 4.62 Total: 21.03 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -1.10 Total: -93.89 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.29 Total: -51.45 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -75.01 5.39 -69.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299517095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.163 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds